BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= O75936
         (387 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3N6W-A nrPDB                                                          811   0.0  
6NPB-A nrPDB                                                          187   7e-48
6DAW-A nrPDB                                                           33   0.18 
2Q4A-A nrPDB                                                           30   1.4  
2A1L-A nrPDB                                                           29   2.8  
5ZL9-A nrPDB                                                           28   4.5  
4P1Z-A nrPDB                                                           28   4.7  
5Z7M-A nrPDB                                                           28   5.3  
2WBP-A nrPDB                                                           28   6.1  

>3N6W-A nrPDB
          Length = 403

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV 60
           MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV
Sbjct: 17  MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV 76

Query: 61  NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL 120
           NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL
Sbjct: 77  NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL 136

Query: 121 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT 180
           QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT
Sbjct: 137 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT 196

Query: 181 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK 240
           WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK
Sbjct: 197 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK 256

Query: 241 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF 300
           LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF
Sbjct: 257 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF 316

Query: 301 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR 360
           DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR
Sbjct: 317 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR 376

Query: 361 HLEGAYADWDVVMSRLRILRQRVENGN 387
           HLEGAYADWDVVMSRLRILRQRVENGN
Sbjct: 377 HLEGAYADWDVVMSRLRILRQRVENGN 403


>6NPB-A nrPDB
          Length = 383

 Score =  187 bits (475), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 181/371 (48%), Gaps = 7/371 (1%)

Query: 14  AHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKK 73
              + + + D  ES + A+WLRDN    +        R + +  +  +  I   + D   
Sbjct: 17  GSFLTLTFEDGSESRFHAIWLRDNALDPETRSPGNGQRLITIGDIPADTRISTALVDDGA 76

Query: 74  VYITW-PDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQLPTLDFEDVLR 132
           + +T+ P+     F   WLK   +     +++ R    P+ + W S    P  D+ +V  
Sbjct: 77  LTVTFAPEGKTVTFPGKWLKSNAYDTDQSSEVGRTS--PDVETWDSSQPAPAFDWNEVQS 134

Query: 133 YDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNV 192
             +    WL  + ++G  +L     + G + +     GF+  T YG  ++V+ +++  N+
Sbjct: 135 DPKAKRDWLDAIARLGFAKLVNGPVREGALIECASMFGFVRETNYGKYFEVRTEVNPTNL 194

Query: 193 AYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQIL 252
           AYT   L  HTD P     P +Q+L+C++ +  GGDS +VDGF   ++L+  +P+ F +L
Sbjct: 195 AYTGLGLQAHTDNPYRDPVPSLQILYCLENSAEGGDSIVVDGFRAAERLRDEDPEGFALL 254

Query: 253 SSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYA 312
           +     F   G D     ++++  +IEL   G+++ I FNN +     D+P E+++ +YA
Sbjct: 255 AGNPARFEYKGSD--GVHLRARRPMIELSPDGEMIAIRFNNRSSAPFVDIPFEKMEAYYA 312

Query: 313 ALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVV 372
           A +   + ++  E   +FK+ PG+    DN R+LH R  Y      SR L+G YAD D +
Sbjct: 313 AYRRLGEFIDDPEMGVSFKLEPGESFIVDNTRVLHARLGYSGSG--SRWLQGCYADKDGL 370

Query: 373 MSRLRILRQRV 383
            S L +L  ++
Sbjct: 371 FSTLNVLNAQL 381


>6DAW-A nrPDB
          Length = 342

 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 5/47 (10%)

Query: 332 MNPGDVITFDNWRLLHGRRSYEA---GTEISRHLEGAYADWDVVMSR 375
           ++PGD++  DN+R++HGR +++A   GT+  R L+ A    D+  SR
Sbjct: 286 LSPGDLLVIDNYRVVHGRAAFKARFDGTD--RWLKKAVVTRDLRKSR 330


>2Q4A-A nrPDB
          Length = 330

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 335 GDVITFDNWRLLHGRRSYEAGTEI 358
           GDV+  DNW +LH RR ++    +
Sbjct: 301 GDVLLIDNWAVLHSRRPFDPPRRV 324


>2A1L-A nrPDB
          Length = 270

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 125 LDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASD 157
           L  ED+ R ++   K L T++K G VR T A+D
Sbjct: 237 LTMEDIRRMEDETQKELETMRKKGSVRGTSAAD 269


>5ZL9-A nrPDB
          Length = 618

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 323 SKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRILR 380
           + E+ + FK + GD+ITFD+ R +  +  Y     + + L G ++ W++      IL 
Sbjct: 477 TAEAPYVFKPSTGDLITFDDARSVQAKGKY----VLDKQLGGLFS-WEIDADNGDILN 529


>4P1Z-A nrPDB
          Length = 128

 Score = 28.5 bits (62), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 337 VITFDNWRLLHGRRSYEAGTEISRHL 362
           V   DNW L++ RR+YEA   + ++L
Sbjct: 7   VKPLDNWLLIYTRRNYEAANSLIQNL 32


>5Z7M-A nrPDB
          Length = 546

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 323 SKESKFTFKMNPGDVITFDNWRLLHGRRSY 352
           + E+ + FK + GD+ITFD+ R +  +  Y
Sbjct: 475 TAEAPYVFKPSTGDLITFDDARSVQAKGKY 504


>2WBP-A nrPDB
          Length = 358

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 312 AALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYE 353
             L++ +D      S +   ++ GDV   DN R +HGRR+++
Sbjct: 286 GTLRKLID-----ASLYELVLDQGDVAFIDNRRAVHGRRAFQ 322


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3N6W-A nrPDB                                                          697   0.0  
6NPB-A nrPDB                                                          606   e-174

Sequences not found previously or not previously below threshold:

1DRY-A nrPDB                                                           42   3e-04
3H9B-A nrPDB                                                           40   0.002
6DAW-A nrPDB                                                           38   0.005
2Q4A-A nrPDB                                                           38   0.005
2OG6-A nrPDB                                                           37   0.019
1OTJ-A nrPDB                                                           36   0.025
1NX8-A nrPDB                                                           36   0.034
3E9A-A nrPDB                                                           33   0.25 
1N7U-A nrPDB                                                           32   0.41 
6D1O-A nrPDB                                                           32   0.54 
4M2G-A nrPDB                                                           32   0.55 
4BQ4-A nrPDB                                                           32   0.67 
6F2A-A nrPDB                                                           31   0.83 
5HPL-A nrPDB                                                           30   1.6  
6D3J-A nrPDB                                                           30   1.7  
3OLM-A nrPDB                                                           30   1.8  
4JWP-A nrPDB                                                           29   2.8  
3OZX-A nrPDB                                                           29   3.0  
5ZTN-A nrPDB                                                           29   3.4  
2YWH-A nrPDB                                                           29   3.9  
5VN6-A nrPDB                                                           29   4.5  
2WBP-A nrPDB                                                           28   5.2  
1YY3-A nrPDB                                                           28   9.0  

>3N6W-A nrPDB
          Length = 403

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV 60
           MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV
Sbjct: 17  MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV 76

Query: 61  NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL 120
           NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL
Sbjct: 77  NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL 136

Query: 121 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT 180
           QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT
Sbjct: 137 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT 196

Query: 181 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK 240
           WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK
Sbjct: 197 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK 256

Query: 241 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF 300
           LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF
Sbjct: 257 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF 316

Query: 301 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR 360
           DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR
Sbjct: 317 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR 376

Query: 361 HLEGAYADWDVVMSRLRILRQRVENGN 387
           HLEGAYADWDVVMSRLRILRQRVENGN
Sbjct: 377 HLEGAYADWDVVMSRLRILRQRVENGN 403


>6NPB-A nrPDB
          Length = 383

 Score =  606 bits (1562), Expect = e-174,   Method: Composition-based stats.
 Identities = 101/371 (27%), Positives = 181/371 (48%), Gaps = 7/371 (1%)

Query: 14  AHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKK 73
              + + + D  ES + A+WLRDN    +        R + +  +  +  I   + D   
Sbjct: 17  GSFLTLTFEDGSESRFHAIWLRDNALDPETRSPGNGQRLITIGDIPADTRISTALVDDGA 76

Query: 74  VYITW-PDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQLPTLDFEDVLR 132
           + +T+ P+     F   WLK   +     +++ R    P+ + W S    P  D+ +V  
Sbjct: 77  LTVTFAPEGKTVTFPGKWLKSNAYDTDQSSEVGRTS--PDVETWDSSQPAPAFDWNEVQS 134

Query: 133 YDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNV 192
             +    WL  + ++G  +L     + G + +     GF+  T YG  ++V+ +++  N+
Sbjct: 135 DPKAKRDWLDAIARLGFAKLVNGPVREGALIECASMFGFVRETNYGKYFEVRTEVNPTNL 194

Query: 193 AYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQIL 252
           AYT   L  HTD P     P +Q+L+C++ +  GGDS +VDGF   ++L+  +P+ F +L
Sbjct: 195 AYTGLGLQAHTDNPYRDPVPSLQILYCLENSAEGGDSIVVDGFRAAERLRDEDPEGFALL 254

Query: 253 SSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYA 312
           +     F   G D     ++++  +IEL   G+++ I FNN +     D+P E+++ +YA
Sbjct: 255 AGNPARFEYKGSD--GVHLRARRPMIELSPDGEMIAIRFNNRSSAPFVDIPFEKMEAYYA 312

Query: 313 ALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVV 372
           A +   + ++  E   +FK+ PG+    DN R+LH R  Y      SR L+G YAD D +
Sbjct: 313 AYRRLGEFIDDPEMGVSFKLEPGESFIVDNTRVLHARLGYSGSG--SRWLQGCYADKDGL 370

Query: 373 MSRLRILRQRV 383
            S L +L  ++
Sbjct: 371 FSTLNVLNAQL 381


>1DRY-A nrPDB
          Length = 324

 Score = 42.3 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 21/183 (11%)

Query: 199 LSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVD 258
           L FHT+       P   +L C +       + +V        L             T   
Sbjct: 141 LEFHTEMAYHRLQPNYVMLACSRADHERTAATLVASVRKALPLLDER---------TRAR 191

Query: 259 FTDIGVDYC-DFSVQSKHKIIELDDKGQVVRIN-FNNATRDTIFDVPVERVQPFYAALKE 316
             D  +  C D + +       +DD G + ++        D       E + P   A KE
Sbjct: 192 LLDRRMPCCVDVAFRGG-----VDDPGAIAQVKPLYGDADDPFLGYDRELLAPEDPADKE 246

Query: 317 FVDLMNSK--ESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTE-ISRHLEGAY--ADWDV 371
            V  ++    E      + PGD++  DN+R  H R  +    +   R L   Y   D + 
Sbjct: 247 AVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSPRWDGKDRWLHRVYIRTDRNG 306

Query: 372 VMS 374
            +S
Sbjct: 307 QLS 309


>3H9B-A nrPDB
          Length = 560

 Score = 40.0 bits (92), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 36  DNC-PCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKR 94
           DNC  C   Y  +      L+E   V  G   ++ D +  +   P   +SE    W +  
Sbjct: 169 DNCEVCGATYSPTE-----LIEPKSVVSGATPVMRDSEHFFFDLPS--FSEMLQAWTRSG 221

Query: 95  CFSKQARAKLQRELFFPECQYWGSELQLPTLDFEDVLRYDEHAYKWLST 143
              +Q   K+Q E F    Q W      P   FE      ++ Y WL  
Sbjct: 222 ALQEQVANKMQ-EWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDA 269


>6DAW-A nrPDB
          Length = 342

 Score = 38.5 bits (88), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 332 MNPGDVITFDNWRLLHGRRSYEAGTEIS-RHLEGAYADWDVVMSR 375
           ++PGD++  DN+R++HGR +++A  + + R L+ A    D+  SR
Sbjct: 286 LSPGDLLVIDNYRVVHGRAAFKARFDGTDRWLKKAVVTRDLRKSR 330


>2Q4A-A nrPDB
          Length = 330

 Score = 38.5 bits (88), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 95/296 (32%), Gaps = 67/296 (22%)

Query: 118 SELQLPTLDFEDVLRYDEHAYKWLSTL-KKVGIVRLTGASDKPGE-VSKLGKRMGFLYLT 175
           + + +P L      +  +    +L +L  + G V   G      +  + + +  GF  L 
Sbjct: 31  ASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVLFRGFPVNSADDFNDVVEAFGFDELP 90

Query: 176 FYGHT---WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIV 232
           + G       V  ++   N +    K+ FH +   +   P     +C  +   GG++ IV
Sbjct: 91  YVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCGGETPIV 150

Query: 233 DGFNVCQKLKKNNPQAFQILS----------------STFVDFTDIGVDYCDFSVQSKHK 276
               V +++K  +P+  Q L                 S+ +               ++ +
Sbjct: 151 LSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQR 210

Query: 277 IIELDDK-------------GQVVRINFN-NATRDTIFDVPVERVQPFYAALKEFVDLMN 322
            ++L  K             G +  I ++ +  R   F+          AA   + D  N
Sbjct: 211 AVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVWFN-------SMVAAYTGWEDKRN 263

Query: 323 SKESKFTF-------------------------KMNPGDVITFDNWRLLHGRRSYE 353
                 TF                             GDV+  DNW +LH RR ++
Sbjct: 264 DPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLHSRRPFD 319


>2OG6-A nrPDB
          Length = 357

 Score = 36.6 bits (83), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 22/182 (12%)

Query: 199 LSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFN-VCQKLKKNNPQAF---QILSS 254
           L+FH +     H P   +L C++   TG           V   L  +   A    +  ++
Sbjct: 176 LTFHNENAFHEHRPDFVMLLCLRADPTGRAGLRTACVRRVLPLLSDSTVDALWAPEFRTA 235

Query: 255 TFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAAL 314
               F   G +      ++   ++  D     +R++   A  + + +   E       AL
Sbjct: 236 PPPSFQLSGPE------EAPAPVLLGDRSDPDLRVDL--AATEPVTERAAE-------AL 280

Query: 315 KEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEIS-RHLEGAYADWDVVM 373
           +E     ++  +  T ++ PG++   DN   +HGR  +    + + R L+  +   D+  
Sbjct: 281 RELQAHFDA--TAVTHRLLPGELAIVDNRVTVHGRTEFTPRYDGTDRWLQRTFVLTDLRR 338

Query: 374 SR 375
           SR
Sbjct: 339 SR 340


>1OTJ-A nrPDB
          Length = 283

 Score = 36.2 bits (82), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 23/163 (14%)

Query: 202 HTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFV--DF 259
           HTD   +  PP   +L   +   TGGD+    G    + L   +    Q+LS      DF
Sbjct: 99  HTDVTFIETPPAGAILAAKELPSTGGDTLWTSGIAAYEAL---SVPFRQLLSGLRAEHDF 155

Query: 260 -----TDIGVDYCDFSVQSK----------HKIIELDDKGQVVRINFNNATRDTIFDVPV 304
                        +   + +          H ++          +  N      I DV  
Sbjct: 156 RKSFPEYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSE 215

Query: 305 ERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLH 347
           +  +   A L      +   E +  ++  P D+  +DN    H
Sbjct: 216 KESE---ALLSFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQH 255


>1NX8-A nrPDB
          Length = 273

 Score = 35.8 bits (81), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 312 AALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYAD 368
           A  +E    +      +      GD++  DN R++H R  +     + R   G  AD
Sbjct: 216 AFFQELGAFLKQPRYYYKHFWEDGDLLIMDNRRVIHEREEFNDDDIVRRLYRGQTAD 272


>3E9A-A nrPDB
          Length = 286

 Score = 32.7 bits (73), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 18/121 (14%)

Query: 215 QLLHCIKQTVTGGDSEIVD--GFNVCQKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQ 272
           +++ C + +  G D+ +VD  GF V ++    +P  F +  S  +       D    +  
Sbjct: 165 KVILCERGSCHGYDNLVVDMLGFGVMKQASNGSPIIFDVTHSLQMR------DPSGAASG 218

Query: 273 SKH-KIIELDDKGQVVRI---------NFNNATRDTIFDVPVERVQPFYAALKEFVDLMN 322
            +  + +EL   G    I         N + A  D    +P+++++PF A +K   DL+ 
Sbjct: 219 GRREQTVELAKAGLATGIAGLFIEAHPNPDKARCDGPSALPLDKLEPFLAQMKALDDLIK 278

Query: 323 S 323
           S
Sbjct: 279 S 279


>1N7U-A nrPDB
          Length = 554

 Score = 31.9 bits (71), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 34  LRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR 71
           + D  P  +          +  + +  N GI   IFDR
Sbjct: 157 MSDTAPDPETLEPGQTEPLIKSDGVYSNSGIASFIFDR 194


>6D1O-A nrPDB
          Length = 301

 Score = 31.9 bits (71), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 117 GSELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFL---- 172
                L    + ++          L       ++   G +    +     +R G +    
Sbjct: 32  DLREPLDDSTWNEI----------LDAFHTYQVIYFPGQAITNEQHIAFSRRFGPVDPVP 81

Query: 173 YLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIV 232
            L       +VQ      N +      ++HTD   L  PP   +++  +    GGD+   
Sbjct: 82  LLKSIEGYPEVQMIRREANESGRVIGENWHTDSTFLDAPPAAVVMYAKEIPPYGGDTLFT 141

Query: 233 DGFNVCQKL 241
             +   + L
Sbjct: 142 SMYTAWETL 150


>4M2G-A nrPDB
          Length = 364

 Score = 31.6 bits (70), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 303 PVERVQPFYA-----------ALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRS 351
           P  R+ P++            A      +++S   +     + GDV+  DN R +HGR  
Sbjct: 270 PYMRLDPYFTSVPQDDTDARRAYDALFKVVDSGMREVV--ADQGDVLFIDNHRAVHGRLP 327

Query: 352 YEAGTEIS-RHLEGAYADWDVVMSR 375
           ++A  + + R L+      D+  SR
Sbjct: 328 FQARYDGTDRWLKRVCVTSDLRRSR 352


>4BQ4-A nrPDB
          Length = 750

 Score = 31.6 bits (70), Expect = 0.67,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 22/171 (12%)

Query: 222 QTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELD 281
           +T TG + E   G  +  + K+++     I+     D+++       F       I+ + 
Sbjct: 27  ETYTGINGEPSKGLKLAMQSKQHSYTGLAIVPEQPWDWSEFTSASLYFD------IVSVG 80

Query: 282 DKGQVVRINFNNATRDTI---FDVPVERVQPFYAALK-------EFVDLMNSKESKFTFK 331
           D      ++  +          D+PV ++Q +YA L        +  D +N        +
Sbjct: 81  DHSTQFYLDVTDQNGAVFTRSIDIPVGKMQSYYAKLSGHDLEVPDSGD-VNDLNLASGLR 139

Query: 332 MNPGDVITFDN----WRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRI 378
            NP    T D+    W             +IS  ++ A  D  V++  +RI
Sbjct: 140 SNP-PTWTSDDRQFVWMWGVKNLDLSGIAKISLSVQSAMHDKTVIIDNIRI 189


>6F2A-A nrPDB
          Length = 358

 Score = 31.2 bits (69), Expect = 0.83,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 78/227 (34%), Gaps = 30/227 (13%)

Query: 162 VSKLGKRMGFLYLTFYGHTWQVQDKIDANNVAYTTGK----LSFHTDYPALHHPPGVQLL 217
           +++   RM       +GHT+Q       +  + T+      L  HT+       P    L
Sbjct: 134 INECVGRMIAYEAEGHGHTFQDMVPSAMSAHSQTSLGSAVELELHTEQAFSPLRPDFVSL 193

Query: 218 HCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILS----STFVD--FTDIGVDYCDFSV 271
            C++    G    +   F+  Q +     Q   +L     +T VD  F   G  +     
Sbjct: 194 ACLR----GDPRALTYLFSARQLVATLTTQEIAMLREPMWTTTVDESFLAEGRTFLLGFE 249

Query: 272 QSKHKIIELDDKGQVVRIN--FNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFT 329
           +    I+   D    +  +            ++    ++ +YA              + +
Sbjct: 250 RGPIPILSGADDDPFIVFDQDLMRGISAPAQELQQTVIRAYYAE-------------RVS 296

Query: 330 FKMNPGDVITFDNWRLLHGRRSYEAGTEIS-RHLEGAYADWDVVMSR 375
             + PG+++  DN R +HGR  +    + + R L  ++   D   SR
Sbjct: 297 HCLAPGEMLLIDNRRAVHGRSIFAPRFDGADRFLSRSFIVADGSRSR 343


>5HPL-A nrPDB
          Length = 380

 Score = 30.0 bits (66), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 278 IELDDKGQVVRINFNNA-------TRDTIFDVPVERVQPFYAALKEFV--DLMNS-KESK 327
           ++L   G+ + +   N        T+  I D   E+ + F     E +  DL+    E +
Sbjct: 195 VDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERE 254

Query: 328 FTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWD 370
               +     I  ++W+     R Y+   E+ +      ++WD
Sbjct: 255 LELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWD 297


>6D3J-A nrPDB
          Length = 295

 Score = 30.0 bits (66), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 14/129 (10%)

Query: 117 GSELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFL---- 172
                L    + ++          L       ++   G +    +     +R G +    
Sbjct: 32  DLREPLDDSTWNEI----------LDAFHTYQVIYFPGQAITNEQHIAFSRRFGPVDPVP 81

Query: 173 YLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIV 232
            L       +VQ      N +       +HTD   L  PP   ++  I+    GGD+  +
Sbjct: 82  ILKSIEGYPEVQMIRREANESSRFIGDDWHTDSTFLDAPPAAVVMRAIEVPEYGGDTGFL 141

Query: 233 DGFNVCQKL 241
             ++  + L
Sbjct: 142 SMYSAWETL 150


>3OLM-A nrPDB
          Length = 429

 Score = 30.0 bits (66), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 278 IELDDKGQVVRINFNNA-------TRDTIFDVPVERVQPFYAALKEFV--DLMNS-KESK 327
           ++L   G+ + +   N        T+  I D   E+ + F     E +  DL+    E +
Sbjct: 244 VDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERE 303

Query: 328 FTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWD 370
               +     I  ++W+     R Y+   E+ +      ++WD
Sbjct: 304 LELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWD 346


>4JWP-A nrPDB
          Length = 185

 Score = 29.2 bits (64), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 127 FEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDK 186
           + + L   E+ ++WL    + G   L   +++ G+V        F     + H+ ++   
Sbjct: 52  WNETLVDLENRHQWLENRNRDGFPVLV--AEREGQVVGYASYGPFRPFEGFRHSSELSVY 109

Query: 187 IDAN 190
           + +N
Sbjct: 110 VASN 113


>3OZX-A nrPDB
          Length = 538

 Score = 29.2 bits (64), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 129 DVLRYDEHAYKWLSTLKKVGIVRLT--GASDKPGEVSKLGKRMGFLYLTF 176
           D+ +  +   KW   +KK+G  +L       K GE+  +    G    TF
Sbjct: 261 DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTF 310


>5ZTN-A nrPDB
          Length = 429

 Score = 29.2 bits (64), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 99  QARAKLQRELFFPECQYWGSELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDK 158
           Q+  K++     PE        +L   +  ++  Y E  +  L+  K+ G   +TG  + 
Sbjct: 21  QSMGKVKATPMTPEQAMKQYMQKLTAFEHHEIFSYPEIYFLGLNAKKRQG---MTGGPNN 77

Query: 159 PG 160
            G
Sbjct: 78  GG 79


>2YWH-A nrPDB
          Length = 600

 Score = 28.9 bits (63), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 32/92 (34%)

Query: 147 VGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQ------------DKIDANNVAY 194
           V  VR+     KPG+   L            G  ++V             DK+ A +V Y
Sbjct: 209 VAFVRIFDGEVKPGDKIMLMST---------GKEYEVTEVGAQTPKMTKFDKLSAGDVGY 259

Query: 195 TTGKLS-----------FHTDYPALHHPPGVQ 215
               +             H   P     PG Q
Sbjct: 260 IAASIKDVRDIRIGDTITHAKNPTKEPVPGFQ 291


>5VN6-A nrPDB
          Length = 290

 Score = 28.9 bits (63), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 49/172 (28%), Gaps = 20/172 (11%)

Query: 202 HTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTD 261
           H+D      PP   +L CI     GGD+   +     + L  +  Q    L       + 
Sbjct: 106 HSDASWRVAPPFGCVLRCIDGPPVGGDTMWANMVLAYENLPDHVKQQIADLR---ARHSI 162

Query: 262 IGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLM 321
                    +  +  +       +   +  +  T         E+V    A    F +  
Sbjct: 163 EASFGAAMPIDKRLALKAQYPDAEHPVVRTHPETG--------EKVLYVNAFTTHFTNFH 214

Query: 322 NSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEIS---RHLEGAYADWD 370
                +     NPG        +LLH      A  E     R  + + A WD
Sbjct: 215 TPARVRVGQDANPGAG------QLLHYLIGQAAIPEYQVRWRWKKNSVAIWD 260


>2WBP-A nrPDB
          Length = 358

 Score = 28.5 bits (62), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 332 MNPGDVITFDNWRLLHGRRSYEAGTE-ISRHLEGAYADWDVVMSR 375
           ++ GDV   DN R +HGRR+++   +   R L+      D+  SR
Sbjct: 301 LDQGDVAFIDNRRAVHGRRAFQPRYDGRDRWLKRINITRDLHRSR 345


>1YY3-A nrPDB
          Length = 346

 Score = 27.7 bits (60), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 299 IFDVPVERVQPFYAAL--KEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRR 350
           I  VP+E+       +  K   +L +S         N GD +  +N R+L  R 
Sbjct: 19  IAQVPLEQRDASRLMVLDKHTGELTDSSFKHIISFFNEGDCLVLNNTRVLPARL 72


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.312    0.136    0.375 

Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,193,431
Number of Sequences: 36641
Number of extensions: 607582
Number of successful extensions: 1722
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1681
Number of HSP's gapped (non-prelim): 45
length of query: 387
length of database: 10,336,785
effective HSP length: 99
effective length of query: 288
effective length of database: 6,709,326
effective search space: 1932285888
effective search space used: 1932285888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 60 (27.7 bits)