BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= O55239
         (264 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5YJI-A nrPDB                                                          547   e-156
5YJF-A nrPDB                                                          462   e-131
2A14-A nrPDB                                                          268   2e-72
3KQY-A nrPDB                                                          186   7e-48
1D2C-A nrPDB                                                           34   0.056
3OFK-A nrPDB                                                           30   0.96 
4CH7-A nrPDB                                                           30   1.0  
3M1G-A nrPDB                                                           30   1.4  
3UJR-A nrPDB                                                           29   2.1  
3UE3-A nrPDB                                                           29   2.2  
5E72-A nrPDB                                                           28   2.9  
1JSX-A nrPDB                                                           28   3.0  
4PTS-A nrPDB                                                           28   3.1  
4Q79-D nrPDB                                                           28   4.3  
1M5N-S nrPDB                                                           28   4.3  
2QNA-A nrPDB                                                           28   4.4  
2Q5D-A nrPDB                                                           28   4.6  
3VT2-A nrPDB                                                           28   5.2  
3MGG-A nrPDB                                                           28   5.6  

>5YJI-A nrPDB
          Length = 284

 Score =  547 bits (1409), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 60
           MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI
Sbjct: 21  MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 80

Query: 61  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 120
           DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN
Sbjct: 81  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 140

Query: 121 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 180
           RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL
Sbjct: 141 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 200

Query: 181 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
           RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ
Sbjct: 201 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 260

Query: 241 NYSSTTSNNEGLFSLVGRKPGRSE 264
           NYSSTTSNNEGLFSLVGRKPGRSE
Sbjct: 261 NYSSTTSNNEGLFSLVGRKPGRSE 284


>5YJF-A nrPDB
          Length = 284

 Score =  462 bits (1188), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/262 (84%), Positives = 239/262 (91%)

Query: 1   MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 60
           MESGFTSKDTYLSHFNPRDYLEKYY FGSRH AE++IL+HLLKNLFKIFCL  VKG+LLI
Sbjct: 21  MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 80

Query: 61  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 120
           DIGSGPTIYQLLSACESF EI+V+DY+DQNL EL+KWLK  P AFDWSPVVTYVCDLEGN
Sbjct: 81  DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGN 140

Query: 121 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 180
           R+KGPEKEEKLR+A+KQVLKCDVTQSQPLG V LPPADC+LSTLCLDAACPDLP Y  AL
Sbjct: 141 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 200

Query: 181 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
           RNLGSLLKPGGFLV++DALKSSYYMIGEQKFSSLPLG E V  AV+EAGYTIE FEVISQ
Sbjct: 201 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 260

Query: 241 NYSSTTSNNEGLFSLVGRKPGR 262
           +YSST +NNEGLFSLV RK  R
Sbjct: 261 SYSSTMANNEGLFSLVARKLSR 282


>2A14-A nrPDB
          Length = 263

 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/262 (52%), Positives = 176/262 (67%), Gaps = 1/262 (0%)

Query: 1   MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 60
           M+ GFT  D Y  HF PRDYL  YYSF      E E+L+  L+ L K F  G ++G+ LI
Sbjct: 1   MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60

Query: 61  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 120
           DIGSGPTIYQ+L+AC+SF +I +SD+TD+N  EL+KWLKKEPGA+DW+P V + C+LEGN
Sbjct: 61  DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120

Query: 121 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 180
             +  EKEEKLR A+K+VLKCDV    PL    LP ADC+L+ L ++ AC  L AYR AL
Sbjct: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180

Query: 181 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
            NL SLLKPGG LV    L+   YM+G+++FS + L    V  AV +AG+ IEQ     Q
Sbjct: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240

Query: 241 NYSSTTSNNEGLFSLVGR-KPG 261
           +YS T + N G+  +V R KPG
Sbjct: 241 SYSVTNAANNGVCCIVARKKPG 262


>3KQY-A nrPDB
          Length = 289

 Score =  186 bits (473), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 151/253 (59%), Gaps = 5/253 (1%)

Query: 14  HFNPRDYLEKYYSFGSRH-CAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLL 72
            F PR YL   Y+      C  N +    L+ L + F  G V G  LIDIGSGPT+YQLL
Sbjct: 29  RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLL 88

Query: 73  SACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 132
           SAC  F +I ++D+ + N  EL +WL++EPGAF+WS    + C +EG      +KE +LR
Sbjct: 89  SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148

Query: 133 RAIKQVLKCDVTQSQPLG-GVSLP-PADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 190
             +K+VL  DV Q QPLG G   P PAD L+S  CL+A  PDL +++ AL ++ +LL+PG
Sbjct: 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208

Query: 191 GFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE--VISQNYSSTTSN 248
           G L+++ AL+ S+Y+ GE + + +P+  E VR+A+  +GY +      ++  +  +   +
Sbjct: 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDD 268

Query: 249 NEGLFSLVGRKPG 261
            +G+F    +K G
Sbjct: 269 VKGVFFAWAQKVG 281


>1D2C-A nrPDB
          Length = 292

 Score = 34.3 bits (77), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 154 LPPADCLLSTLCLDAACPDLP-------AYRTALRNLGSLLKPGGFLVM 195
           +P  D   + +CL  +   LP        +R AL+N+ S+++PGG LV+
Sbjct: 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172


>3OFK-A nrPDB
          Length = 216

 Score = 30.0 bits (66), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 172 DLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYT 231
           D+   RTA+ N+  +L PGG LV   A  ++    G         G ETV   + EA   
Sbjct: 129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVA------GAETVITILTEALTE 182

Query: 232 IEQFEVISQNYSSTTSNNEGLFSLVGRKPGRS 263
           +E+ +   Q      S +E       R P RS
Sbjct: 183 VERVQCQGQ------SADEDCLLARFRNPERS 208


>4CH7-A nrPDB
          Length = 342

 Score = 30.0 bits (66), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 218 WETVRDAVEEAGYTIEQFEVISQNYSSTTSNN 249
           WE   DA+EE G  I  F+ +S  Y  TTS  
Sbjct: 239 WEVPEDAIEEVGRYIAGFKGVSHCYQRTTSEK 270


>3M1G-A nrPDB
          Length = 362

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 193 LVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGY-TIEQFEVISQNYSSTTS 247
           LV  DA+   ++  G  K + +P  W  +RD  +  G+     F  I Q+Y  T +
Sbjct: 252 LVRFDAVYHGHFKCGRNKITEMPNLWGYLRDLFQTPGFGDTTDFTEIKQHYYITHA 307


>3UJR-A nrPDB
          Length = 443

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 168 AACPDLPAYRTALRNLGS--LLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAV 225
           AA  +LP YR   +  G+  L+ P     +++    +   +  Q+F  LP+G E+ RDA+
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 181

Query: 226 EEAGYTIEQFE-VISQNYSSTTSN--NEGLFS 254
                     + VI   Y    +N  +EG F+
Sbjct: 182 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFA 213


>3UE3-A nrPDB
          Length = 554

 Score = 28.9 bits (63), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 177 RTALRNLGS--LLKPGGFL---VMVDALKSSYYM---IGEQKFSSLPLGWETVRDAVEEA 228
           + A+RN G+  + +PG  +    +  AL+S  Y    I      ++ LGW T+RD     
Sbjct: 265 KDAMRNRGAIDMFEPGSTMKPFTVAAALESGQYTPNSIVNTAPGTMRLGWHTIRDTHNYG 324

Query: 229 GYTIEQFEVISQNYSS 244
             T+    V S N  S
Sbjct: 325 ALTLTGIIVKSSNVGS 340


>5E72-A nrPDB
          Length = 346

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 176 YRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK---FSSLPLGWETVRDAVEEAGYTI 232
           YR ALR++ ++L+ GG L +  A  + +    E +   F +L   ++ V  ++E   Y  
Sbjct: 272 YRKALRSIYNVLEDGGRLAI--AFPTDFNGKAEAEAVGFRTLGRYYQRVHKSLERYFYVF 329

Query: 233 EQFEVISQNYS 243
           E+ EV+ Q  S
Sbjct: 330 EKLEVLFQGPS 340


>1JSX-A nrPDB
          Length = 207

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 7  SKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGP 66
           K+  +++ N      K Y+  S       ++RH+L +   I     ++GE  ID+G+GP
Sbjct: 20 QKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDS---IVVAPYLQGERFIDVGTGP 76


>4PTS-A nrPDB
          Length = 348

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 193 LVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGY-TIEQFEVISQNY 242
           L   DA+   ++     K S +P+ W   RD  +  G+     F  I Q+Y
Sbjct: 238 LARFDAVYHGHFKCNRSKLSEMPVLWAYARDLFQTPGFGDTTDFTQIKQHY 288


>4Q79-D nrPDB
          Length = 277

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 66  PTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKE 101
           P +  L+SA E+    +++D  D+ LW+LQ   +++
Sbjct: 226 PVMLCLMSAIETGVIFLINDGIDRGLWDLQNKAERQ 261


>1M5N-S nrPDB
          Length = 485

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 160 LLSTLCLDAACPDLPAYRTALRNLGSLLK-----------PGGFLVMVDALKSSYYMIGE 208
           ++  +C    CPD      AL+NL  ++            P  F + ++A+KS    +  
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL 277

Query: 209 QKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
           Q        W  V D  EE    IE  E   Q
Sbjct: 278 QGIE----FWSNVCD--EEMDLAIEASEAAEQ 303


>2QNA-A nrPDB
          Length = 762

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 44/162 (27%)

Query: 111 VTYVC-DLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTL----- 164
           + Y+C D++  +++  +K  ++  AI Q ++    + +P   V L   + LL++L     
Sbjct: 29  IGYICQDIDPEQLQ--DKSNEILTAIIQGMR----KEEPSNNVKLAATNALLNSLEFTKA 82

Query: 165 ---------------CLDAACPDLPAYRTALRNLGSLLK-----------PGGFLVMVDA 198
                          C    CPD      AL+NL  ++            P  F + ++A
Sbjct: 83  NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 142

Query: 199 LKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
           +KS    +  Q        W  V D  EE    IE  E   Q
Sbjct: 143 MKSDIDEVALQGIEF----WSNVCD--EEMDLAIEASEAAEQ 178


>2Q5D-A nrPDB
          Length = 876

 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 160 LLSTLCLDAACPDLPAYRTALRNLGSLLK-----------PGGFLVMVDALKSSYYMIGE 208
           ++  +C    CPD      AL+NL  ++            P  F + ++A+KS    +  
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL 277

Query: 209 QKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
           Q        W  V D  EE    IE  E   Q
Sbjct: 278 QGIE----FWSNVCD--EEMDLAIEASEAAEQ 303


>3VT2-A nrPDB
          Length = 526

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 5   FTSKDTYLSHFNPRDYLEKYYSFGSRHCAE 34
           +TS   Y  H+   D  + YY   SRHC +
Sbjct: 437 YTSNGGYNQHWKFTDIGDGYYKISSRHCGK 466


>3MGG-A nrPDB
          Length = 276

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 153 SLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 210
           SLP  D     + +      L +   AL++L  +LKPGG + +++    S Y   E K
Sbjct: 98  SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGK 155


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5YJI-A nrPDB                                                          477   e-135
5YJF-A nrPDB                                                          460   e-130
2A14-A nrPDB                                                          436   e-123
3KQY-A nrPDB                                                          394   e-110

Sequences not found previously or not previously below threshold:

2VA8-A nrPDB                                                           33   0.11 
1L5N-A nrPDB                                                           33   0.18 
3CF4-A nrPDB                                                           32   0.19 
1D2C-A nrPDB                                                           32   0.29 
3OFK-A nrPDB                                                           31   0.49 
5HH9-A nrPDB                                                           30   1.1  
5TEO-A nrPDB                                                           29   1.6  
5O2U-A nrPDB                                                           29   1.8  
1AUM-A nrPDB                                                           29   2.0  
4KXR-B nrPDB                                                           29   2.1  
3DMF-A nrPDB                                                           29   2.7  
4AIB-A nrPDB                                                           28   3.2  


CONVERGED!
>5YJI-A nrPDB
          Length = 284

 Score =  477 bits (1227), Expect = e-135,   Method: Composition-based stats.
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 60
           MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI
Sbjct: 21  MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 80

Query: 61  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 120
           DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN
Sbjct: 81  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 140

Query: 121 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 180
           RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL
Sbjct: 141 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 200

Query: 181 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
           RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ
Sbjct: 201 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 260

Query: 241 NYSSTTSNNEGLFSLVGRKPGRSE 264
           NYSSTTSNNEGLFSLVGRKPGRSE
Sbjct: 261 NYSSTTSNNEGLFSLVGRKPGRSE 284


>5YJF-A nrPDB
          Length = 284

 Score =  460 bits (1184), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/262 (84%), Positives = 239/262 (91%)

Query: 1   MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 60
           MESGFTSKDTYLSHFNPRDYLEKYY FGSRH AE++IL+HLLKNLFKIFCL  VKG+LLI
Sbjct: 21  MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 80

Query: 61  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 120
           DIGSGPTIYQLLSACESF EI+V+DY+DQNL EL+KWLK  P AFDWSPVVTYVCDLEGN
Sbjct: 81  DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGN 140

Query: 121 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 180
           R+KGPEKEEKLR+A+KQVLKCDVTQSQPLG V LPPADC+LSTLCLDAACPDLP Y  AL
Sbjct: 141 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 200

Query: 181 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
           RNLGSLLKPGGFLV++DALKSSYYMIGEQKFSSLPLG E V  AV+EAGYTIE FEVISQ
Sbjct: 201 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 260

Query: 241 NYSSTTSNNEGLFSLVGRKPGR 262
           +YSST +NNEGLFSLV RK  R
Sbjct: 261 SYSSTMANNEGLFSLVARKLSR 282


>2A14-A nrPDB
          Length = 263

 Score =  436 bits (1121), Expect = e-123,   Method: Composition-based stats.
 Identities = 136/259 (52%), Positives = 174/259 (67%)

Query: 1   MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 60
           M+ GFT  D Y  HF PRDYL  YYSF      E E+L+  L+ L K F  G ++G+ LI
Sbjct: 1   MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60

Query: 61  DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 120
           DIGSGPTIYQ+L+AC+SF +I +SD+TD+N  EL+KWLKKEPGA+DW+P V + C+LEGN
Sbjct: 61  DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120

Query: 121 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 180
             +  EKEEKLR A+K+VLKCDV    PL    LP ADC+L+ L ++ AC  L AYR AL
Sbjct: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180

Query: 181 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
            NL SLLKPGG LV    L+   YM+G+++FS + L    V  AV +AG+ IEQ     Q
Sbjct: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240

Query: 241 NYSSTTSNNEGLFSLVGRK 259
           +YS T + N G+  +V RK
Sbjct: 241 SYSVTNAANNGVCCIVARK 259


>3KQY-A nrPDB
          Length = 289

 Score =  394 bits (1013), Expect = e-110,   Method: Composition-based stats.
 Identities = 100/254 (39%), Positives = 151/254 (59%), Gaps = 5/254 (1%)

Query: 13  SHFNPRDYLEKYYSFGSRH-CAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQL 71
             F PR YL   Y+      C  N +    L+ L + F  G V G  LIDIGSGPT+YQL
Sbjct: 28  QRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQL 87

Query: 72  LSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 131
           LSAC  F +I ++D+ + N  EL +WL++EPGAF+WS    + C +EG      +KE +L
Sbjct: 88  LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147

Query: 132 RRAIKQVLKCDVTQSQPLG-GVSLP-PADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP 189
           R  +K+VL  DV Q QPLG G   P PAD L+S  CL+A  PDL +++ AL ++ +LL+P
Sbjct: 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP 207

Query: 190 GGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE--VISQNYSSTTS 247
           GG L+++ AL+ S+Y+ GE + + +P+  E VR+A+  +GY +      ++  +  +   
Sbjct: 208 GGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVD 267

Query: 248 NNEGLFSLVGRKPG 261
           + +G+F    +K G
Sbjct: 268 DVKGVFFAWAQKVG 281


>2VA8-A nrPDB
          Length = 715

 Score = 33.5 bits (75), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 25/135 (18%)

Query: 1   MESG-FTSKDTYLSHFNPRDYLEKYYSFGS--RHCAE--NEILRHLLKNLFKIFCLGAVK 55
           M SG + + D +L +++    +  Y    S  RH  E  NE+   +L  L          
Sbjct: 107 MTSGDYDTDDAWLKNYD--IIITTYEKLDSLWRHRPEWLNEVNYFVLDELH--------- 155

Query: 56  GELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVC 115
              L D   GP +  +    +    + +S  T  N  ++ KWL  EP A +W PV     
Sbjct: 156 --YLNDPERGPVVESVTIRAKRRNLLALSA-TISNYKQIAKWLGAEPVATNWRPVP---- 208

Query: 116 DLEGNRMKGPEKEEK 130
            +EG  +  PE+++K
Sbjct: 209 LIEG--VIYPERKKK 221


>1L5N-A nrPDB
          Length = 356

 Score = 32.7 bits (73), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 161 LSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLP-LGWE 219
           L  L  D   PD  A     +++  LLKP G L  ++ L     + G    +  P +G +
Sbjct: 4   LHALLRDIPAPDAEAMARTQQHIDGLLKPPGSLGRLETLAVQ--LAGMPGLNGTPQVGEK 61

Query: 220 TVRDAVEEAGYTIEQFEVISQNYSSTTSNN-----EGLFSLVGR 258
            V     + G   E   V  +  ++  + N      G+  L  +
Sbjct: 62  AVLVMCADHGVWDEGVAVSPKIVTAIQAANMTRGTTGVCVLAAQ 105


>3CF4-A nrPDB
          Length = 807

 Score = 32.3 bits (72), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 7   SKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLL---KNLFKIFCLGAVKGELLIDIG 63
           +KD Y   +   ++L++ +   +  C   +I        K L++ F  G  +   L +IG
Sbjct: 530 TKDVY---YIAEEFLKRNFIVVTTGCGAMDIGMFKDADGKTLYERF-PGGFQCGGLANIG 585

Query: 64  SGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGA--FDWSPVVTYV------C 115
           S  +   +  A E    I      + NL E+  ++    GA    W             C
Sbjct: 586 SCVSNAHITGAAEKVAAIFAQRTLEGNLAEIGDYILNRVGACGLAWGAFSQKASSIGTGC 645

Query: 116 DLEG-NRMKGPEKEEKLRRAIKQVLKCD---VTQSQPLGGVSLPPA 157
           ++ G   + GP   +  R  I +  + D   V  ++    + +PPA
Sbjct: 646 NIFGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARNGQEMPIPPA 691


>1D2C-A nrPDB
          Length = 292

 Score = 31.9 bits (71), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 154 LPPADCLLSTLCLDAACPDLP-------AYRTALRNLGSLLKPGGFLVM 195
           +P  D   + +CL  +   LP        +R AL+N+ S+++PGG LV+
Sbjct: 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172


>3OFK-A nrPDB
          Length = 216

 Score = 31.2 bits (69), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 172 DLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYT 231
           D+   RTA+ N+  +L PGG LV   A  ++      +++  +  G ETV   + EA   
Sbjct: 129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATC-----RRWGHVA-GAETVITILTEALTE 182

Query: 232 IEQFEVISQNYSSTTSNNEGLFSLVGRKPGRS 263
           +E+ +   Q+       +E       R P RS
Sbjct: 183 VERVQCQGQS------ADEDCLLARFRNPERS 208


>5HH9-A nrPDB
          Length = 390

 Score = 30.0 bits (66), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 167 DAACPDLPAYRTALRNLGSLLKPGG-----FLVMVDALKSSYYMIGEQK 210
           +   P +P +  A  N G+L+ PGG       + +      +  +G+ +
Sbjct: 247 EHLVPSIPTFSRA-DNFGTLMTPGGYHAFEHRLALGTAFELHLQLGKAE 294


>5TEO-A nrPDB
          Length = 110

 Score = 29.2 bits (64), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 18 RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACE 76
          RDY++++Y       A  E+   + + L         K  +L  +G G T+ ++++AC+
Sbjct: 27 RDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCK-TILKALGPGATLEEMMTACQ 84


>5O2U-A nrPDB
          Length = 500

 Score = 29.2 bits (64), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 18  RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACE 76
           RDY++++Y       A  E+   + + L         K  +L  +G G T+ ++++AC+
Sbjct: 294 RDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCK-TILKALGPGATLEEMMTACQ 351


>1AUM-A nrPDB
          Length = 70

 Score = 29.2 bits (64), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 18 RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACE 76
          RDY++++Y       A  E+   + + L         K  +L  +G G T+ ++++AC+
Sbjct: 12 RDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCK-TILKALGPGATLEEMMTACQ 69


>4KXR-B nrPDB
          Length = 194

 Score = 28.9 bits (63), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 58  LLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWS 108
            L+D  +GP + QL+ A + F    ++D     L E+++ + +   A++W+
Sbjct: 51  SLMDAWAGPVVMQLMEAAKPFVR-WLTDLC-VQLSEVERQIHEIVRAYEWA 99


>3DMF-A nrPDB
          Length = 381

 Score = 28.9 bits (63), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 8   KDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSG 65
              Y  H  P         F +       +L  LL+ L +      V+G  ++D+G+G
Sbjct: 195 GAEYTFHHLPG-------VFSAGKVDPASLL--LLEALQERLGPEGVRGRQVLDLGAG 243


>4AIB-A nrPDB
          Length = 395

 Score = 28.5 bits (62), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 29  SRHCAENEILRHLLKNLFKIFCLGAVKG--ELLIDIGSGPTIYQLLSACESFTEIIVSDY 86
                 +E+    L        L    G    LIDIG G   +  ++  E F   I    
Sbjct: 187 GSDSHNSEVFTKALTKARNTVTLAEQFGMKPYLIDIGGG---FSQVAPFEEFAATIEKTI 243

Query: 87  TDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 131
            +    E  +++  EPG +  S     V  L G R++    ++++
Sbjct: 244 KELEFPERTRFI-AEPGRYMASNAFHLVSSLHGKRVRIQNGKKQI 287


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.135    0.375 

Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,262,571
Number of Sequences: 36641
Number of extensions: 395945
Number of successful extensions: 1183
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 36
length of query: 264
length of database: 10,336,785
effective HSP length: 95
effective length of query: 169
effective length of database: 6,855,890
effective search space: 1158645410
effective search space used: 1158645410
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 58 (26.9 bits)