BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= O35820 (163 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2KHZ-A nrPDB 333 2e-92 4KXN-A nrPDB 287 2e-78 4P5E-A nrPDB 241 8e-65 6EVS-A nrPDB 37 0.003 5W1B-A nrPDB 30 0.37 4WWA-A nrPDB 30 0.40 1F8X-A nrPDB 30 0.40 3S4Y-A nrPDB 29 0.75 2F17-A nrPDB 29 0.86 3WEN-A nrPDB 26 7.5 4Q4L-A nrPDB 26 7.8 >2KHZ-A nrPDB Length = 165 Score = 333 bits (853), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 163/163 (100%), Positives = 163/163 (100%) Query: 1 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAG 60 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAG Sbjct: 3 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAG 62 Query: 61 GDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI 120 GDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI Sbjct: 63 GDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI 122 Query: 121 RGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA 163 RGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA Sbjct: 123 RGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA 165 >4KXN-A nrPDB Length = 152 Score = 287 bits (734), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 140/141 (99%), Positives = 141/141 (100%) Query: 11 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDL 70 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQ+L Sbjct: 4 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQNL 63 Query: 71 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ 130 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ Sbjct: 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ 123 Query: 131 VWDYAEGEVETMLDRYFEAYL 151 VWDYAEGEVETMLDRYFEAYL Sbjct: 124 VWDYAEGEVETMLDRYFEAYL 144 >4P5E-A nrPDB Length = 152 Score = 241 bits (616), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 119/139 (85%), Positives = 125/139 (89%) Query: 11 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDL 70 ++YFCGSIRGGRED+ LY RIVSRLRR+G VLTEHVA AEL GEEAAGGD+ IHEQDL Sbjct: 4 ALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAAELGARGEEAAGGDRLIHEQDL 63 Query: 71 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ 130 WLQQADVVVAEVTQPSLGVGYELGRAVA K ILCLFRPQSGRVLSAMIRGAADGSRFQ Sbjct: 64 EWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFRPQSGRVLSAMIRGAADGSRFQ 123 Query: 131 VWDYAEGEVETMLDRYFEA 149 VWDY EGEVE +LDRYFEA Sbjct: 124 VWDYEEGEVEALLDRYFEA 142 >6EVS-A nrPDB Length = 142 Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 64 FIHEQDLNWLQQADVVVAEV--TQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIR 121 F+ + DL ++ AD+ + G +ELG + LGKP++ LF P +G +++ MI Sbjct: 54 FVFKNDLEHIKWADITFGIIGDNYDDTGTAWELGASYILGKPVM-LFSP-TGEIINLMIT 111 Query: 122 GAADGSRFQVWDYAEG 137 + + F+ W+ E Sbjct: 112 DSL-HAYFEDWNDVEN 126 >5W1B-A nrPDB Length = 467 Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 112 SGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSH 160 +GR ++AM++G +G+ + Y G+V+ + DR EA +P + + H Sbjct: 305 AGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGH 353 >4WWA-A nrPDB Length = 261 Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 51 LEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRP 110 LE LGE+ GG F + ++ W+ D V VG ++G +L Sbjct: 106 LEFLGEDLPGGHGFSNLKNFLWMHDQDPYSDLVATTLRKVGRQIG--------LLHWNDY 157 Query: 111 QSGRVLSAMIRGAADGSRF--QVWDYAEGEVETML-DRYFEAYLPQKTASSSH 160 G + S+ I DG+R+ + D+ G V ++ D+ + Y+ ++ S+H Sbjct: 158 CHGDLTSSNIVLVRDGARWTPHLIDFGLGSVSNLVEDKGVDLYVLERAILSTH 210 >1F8X-A nrPDB Length = 157 Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 3/64 (4%) Query: 66 HEQDLNWLQQADVVVAEVT--QPSLGVGYELGRAVALGKPILCLFRPQS-GRVLSAMIRG 122 + DLN ++ D+++ + +G+G ELG A++ GK +L + + G+ ++ M G Sbjct: 69 YNNDLNGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWG 128 Query: 123 AADG 126 +D Sbjct: 129 VSDN 132 >3S4Y-A nrPDB Length = 247 Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 98 VALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFE 148 V L +P+ FR + A++R ADG +++D EGE E+ L + Sbjct: 26 VILNQPLDNYFRHLWNK---ALLRACADGGANRLYDITEGERESFLPEFIN 73 >2F17-A nrPDB Length = 263 Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Query: 85 QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLD 144 +P L G V L +P+ FR + A++R ADG ++D EGE E+ L Sbjct: 29 EPLLPTGNLKYCLVVLNQPLDARFRHLWKK---ALLRACADGGANHLYDLTEGERESFLP 85 Query: 145 RY----FEAYLPQ 153 + F++ P+ Sbjct: 86 EFVSGDFDSIRPE 98 >3WEN-A nrPDB Length = 913 Score = 26.2 bits (56), Expect = 7.5, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Query: 132 WDYAE-GEVETMLDRYFEAYLP 152 W Y + E+ET++D+Y EA +P Sbjct: 329 WGYRDVNEIETVVDKYAEARIP 350 >4Q4L-A nrPDB Length = 485 Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 30 RIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHE-QDLNWLQQADVVVAEVTQP 86 + V+ + + EH + +GE G+ F HE +D N L + +V ++ +P Sbjct: 180 KTVNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEP 237 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2KHZ-A nrPDB 313 3e-86 4KXN-A nrPDB 274 1e-74 4P5E-A nrPDB 254 1e-68 Sequences not found previously or not previously below threshold: 6EVS-A nrPDB 34 0.029 5W1B-A nrPDB 34 0.034 2F17-A nrPDB 30 0.38 3S4Y-A nrPDB 30 0.49 1T5O-A nrPDB 28 1.4 1FWY-A nrPDB 28 1.4 4WWA-A nrPDB 28 1.4 2OI7-A nrPDB 28 1.4 1VYH-C nrPDB 28 2.1 1F8X-A nrPDB 27 4.3 3HYO-A nrPDB 27 4.5 3EH7-A nrPDB 26 5.1 4PMW-A nrPDB 26 5.2 1H5Y-A nrPDB 26 5.8 4V4B-BE nrPDB 26 8.9 5IT7-DD nrPDB 26 9.1 4N5A-A nrPDB 26 9.1 CONVERGED! >2KHZ-A nrPDB Length = 165 Score = 313 bits (801), Expect = 3e-86, Method: Composition-based stats. Identities = 163/163 (100%), Positives = 163/163 (100%) Query: 1 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAG 60 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAG Sbjct: 3 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAG 62 Query: 61 GDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI 120 GDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI Sbjct: 63 GDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI 122 Query: 121 RGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA 163 RGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA Sbjct: 123 RGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA 165 >4KXN-A nrPDB Length = 152 Score = 274 bits (701), Expect = 1e-74, Method: Composition-based stats. Identities = 140/141 (99%), Positives = 141/141 (100%) Query: 11 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDL 70 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQ+L Sbjct: 4 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQNL 63 Query: 71 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ 130 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ Sbjct: 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ 123 Query: 131 VWDYAEGEVETMLDRYFEAYL 151 VWDYAEGEVETMLDRYFEAYL Sbjct: 124 VWDYAEGEVETMLDRYFEAYL 144 >4P5E-A nrPDB Length = 152 Score = 254 bits (649), Expect = 1e-68, Method: Composition-based stats. Identities = 119/139 (85%), Positives = 125/139 (89%) Query: 11 SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDL 70 ++YFCGSIRGGRED+ LY RIVSRLRR+G VLTEHVA AEL GEEAAGGD+ IHEQDL Sbjct: 4 ALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAAELGARGEEAAGGDRLIHEQDL 63 Query: 71 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQ 130 WLQQADVVVAEVTQPSLGVGYELGRAVA K ILCLFRPQSGRVLSAMIRGAADGSRFQ Sbjct: 64 EWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFRPQSGRVLSAMIRGAADGSRFQ 123 Query: 131 VWDYAEGEVETMLDRYFEA 149 VWDY EGEVE +LDRYFEA Sbjct: 124 VWDYEEGEVEALLDRYFEA 142 >6EVS-A nrPDB Length = 142 Score = 34.2 bits (77), Expect = 0.029, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 64 FIHEQDLNWLQQADVVVAEV--TQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIR 121 F+ + DL ++ AD+ + G +ELG + LGKP++ LF P +G +++ MI Sbjct: 54 FVFKNDLEHIKWADITFGIIGDNYDDTGTAWELGASYILGKPVM-LFSP-TGEIINLMIT 111 Query: 122 GAADGSRFQVWDYAE 136 + + F+ W+ E Sbjct: 112 DSLH-AYFEDWNDVE 125 >5W1B-A nrPDB Length = 467 Score = 33.8 bits (76), Expect = 0.034, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 112 SGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSH 160 +GR ++AM++G +G+ + Y G+V+ + DR EA +P + + H Sbjct: 305 AGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGH 353 >2F17-A nrPDB Length = 263 Score = 30.4 bits (67), Expect = 0.38, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%) Query: 98 VALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRY----FEAYLPQ 153 V L +P+ FR + A++R ADG ++D EGE E+ L + F++ P+ Sbjct: 42 VVLNQPLDARFRHLWKK---ALLRACADGGANHLYDLTEGERESFLPEFVSGDFDSIRPE 98 >3S4Y-A nrPDB Length = 247 Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Query: 98 VALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRY----FEAYLPQ 153 V L +P+ FR + A++R ADG +++D EGE E+ L + F++ P+ Sbjct: 26 VILNQPLDNYFRHLWNK---ALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPE 82 >1T5O-A nrPDB Length = 351 Score = 28.4 bits (62), Expect = 1.4, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 15/106 (14%) Query: 44 EHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGV---GYELG---RA 97 + +A E E L EE ++ + E L+ DVV+ L G LG A Sbjct: 115 KELALREAEKLAEEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSA 174 Query: 98 VALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETML 143 V GK I RV++ R GSR W+ E ++ L Sbjct: 175 VEQGKEI---------RVIACETRPLNQGSRLTCWELMEDGIDVTL 211 >1FWY-A nrPDB Length = 331 Score = 28.4 bits (62), Expect = 1.4, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 17/70 (24%) Query: 39 GKVLTEHVADA--ELEPLGEE---AAGGD---QFIHEQDLNWLQQADVVVAEVTQPSLGV 90 GK + +HV DA EL GGD Q + + +LNW+ QA+ LG Sbjct: 32 GKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAE---------QLGT 82 Query: 91 GYELGRAVAL 100 G+ + +A Sbjct: 83 GHAMQQAAPF 92 >4WWA-A nrPDB Length = 261 Score = 28.4 bits (62), Expect = 1.4, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 51 LEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRP 110 LE LGE+ GG F + ++ W+ D V VG ++G L C Sbjct: 106 LEFLGEDLPGGHGFSNLKNFLWMHDQDPYSDLVATTLRKVGRQIG---LLHWNDYC---- 158 Query: 111 QSGRVLSAMIRGAADGSRF--QVWDYAEGEVETML-DRYFEAYLPQKTASSSH 160 G + S+ I DG+R+ + D+ G V ++ D+ + Y+ ++ S+H Sbjct: 159 -HGDLTSSNIVLVRDGARWTPHLIDFGLGSVSNLVEDKGVDLYVLERAILSTH 210 >2OI7-A nrPDB Length = 456 Score = 28.4 bits (62), Expect = 1.4, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 17/70 (24%) Query: 39 GKVLTEHVADA--ELEPLGEE---AAGGD---QFIHEQDLNWLQQADVVVAEVTQPSLGV 90 GK + +HV DA EL GGD Q + + +LNW+ QA+ LG Sbjct: 32 GKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAE---------QLGT 82 Query: 91 GYELGRAVAL 100 G+ + +A Sbjct: 83 GHAMQQAAPF 92 >1VYH-C nrPDB Length = 410 Score = 28.0 bits (61), Expect = 2.1, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Query: 107 LFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETML 143 +F P V S M+ + D + +VWDY G+ E L Sbjct: 115 IFHP----VFSVMVSASEDAT-IKVWDYETGDFERTL 146 >1F8X-A nrPDB Length = 157 Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 66 HEQDLNWLQQADVVVAEVT--QPSLGVGYELGRAVALGKPILCLFRPQS-GRVLSAMIRG 122 + DLN ++ D+++ + +G+G ELG A++ GK +L + + G+ ++ M G Sbjct: 69 YNNDLNGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWG 128 Query: 123 AAD 125 +D Sbjct: 129 VSD 131 >3HYO-A nrPDB Length = 282 Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 26 ALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQ 85 AL +I + L + + L+ V D L LG+ G DQ +QQADV++ T+ Sbjct: 87 ALCQQITTYLEQ--QTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTE 144 Query: 86 PSLGVG 91 +L G Sbjct: 145 AALLTG 150 >3EH7-A nrPDB Length = 434 Score = 26.5 bits (57), Expect = 5.1, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 61 GDQFIHEQDLNWLQQADVVVAEVTQPSLG-VGYELGRAVA 99 GD IH L+++ AD + + +P +G V +GR A Sbjct: 168 GDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCA 207 >4PMW-A nrPDB Length = 770 Score = 26.5 bits (57), Expect = 5.2, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 7/49 (14%) Query: 11 SVYFCGSIRGGRE-------DQALYARIVSRLRRYGKVLTEHVADAELE 52 ++YFC + +E + LY S +RR+ V+ + A L Sbjct: 584 ALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 632 >1H5Y-A nrPDB Length = 253 Score = 26.5 bits (57), Expect = 5.8, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 55 GEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGY--ELGRAVALGKPILCLFRPQS 112 G EA G D +++ L ++++ + + G+GY EL R VA I + + Sbjct: 148 GREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGA 207 Query: 113 GRV 115 GRV Sbjct: 208 GRV 210 >4V4B-BE nrPDB Length = 222 Score = 25.7 bits (55), Expect = 8.9, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Query: 107 LFRPQSGRVLSAMIRGAADG--------SRFQVWDYAEGEVETMLDRYF 147 L R +G + ++GA+DG +RF WD+ E++ L R + Sbjct: 140 LQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSY 188 >5IT7-DD nrPDB Length = 295 Score = 25.7 bits (55), Expect = 9.1, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Query: 107 LFRPQSGRVLSAMIRGAADG--------SRFQVWDYAEGEVETMLDRYF 147 L R +G + ++GA+DG +RF WD+ E++ L R + Sbjct: 148 LQRTTTGARIFGALKGASDGGLYVPHSENRFPGWDFEAEELDADLLRTY 196 >4N5A-A nrPDB Length = 557 Score = 25.7 bits (55), Expect = 9.1, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 25/48 (52%) Query: 73 LQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI 120 ++ D +V +TQPS+ + + A + I+CLF V S+++ Sbjct: 398 VEDIDFLVEHITQPSISLELFIDLAHYMKNHIICLFNIVETEVPSSIL 445 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.140 0.422 Lambda K H 0.267 0.0430 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,877,982 Number of Sequences: 36641 Number of extensions: 283146 Number of successful extensions: 664 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 647 Number of HSP's gapped (non-prelim): 39 length of query: 163 length of database: 10,336,785 effective HSP length: 90 effective length of query: 73 effective length of database: 7,039,095 effective search space: 513853935 effective search space used: 513853935 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 55 (25.7 bits)