BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= O33407 (646 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3KVN-X nrPDB 1261 0.0 5XTU-A nrPDB 39 0.007 5ZJN-A nrPDB 37 0.026 3RBH-A nrPDB 30 3.6 3FCX-A nrPDB 30 3.7 2Y0D-A nrPDB 29 5.4 >3KVN-X nrPDB Length = 632 Score = 1261 bits (3263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/622 (100%), Positives = 622/622 (100%) Query: 25 APSPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGN 84 APSPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGN Sbjct: 11 APSPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGN 70 Query: 85 QLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSR 144 QLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSR Sbjct: 71 QLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSR 130 Query: 145 DGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQAGAR 204 DGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQAGAR Sbjct: 131 DGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQAGAR 190 Query: 205 YIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLLKEGM 264 YIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLLKEGM Sbjct: 191 YIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLLKEGM 250 Query: 265 ANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIAD 324 ANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIAD Sbjct: 251 ANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIAD 310 Query: 325 YTYSLLSAPWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQRLDF 384 YTYSLLSAPWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQRLDF Sbjct: 311 YTYSLLSAPWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQRLDF 370 Query: 385 DSQDSAASGDGNGYNLTLGGSYRIDEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAF 444 DSQDSAASGDGNGYNLTLGGSYRIDEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAF Sbjct: 371 DSQDSAASGDGNGYNLTLGGSYRIDEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAF 430 Query: 445 VQYQENRWWADAALTGGYLDYDDLKRKFALGGGERSEKGDTNGHLWAFSARLGYDIAQQA 504 VQYQENRWWADAALTGGYLDYDDLKRKFALGGGERSEKGDTNGHLWAFSARLGYDIAQQA Sbjct: 431 VQYQENRWWADAALTGGYLDYDDLKRKFALGGGERSEKGDTNGHLWAFSARLGYDIAQQA 490 Query: 505 DSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQL 564 DSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQL Sbjct: 491 DSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQL 550 Query: 565 FAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGG 624 FAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGG Sbjct: 551 FAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGG 610 Query: 625 YNWRKGEDDTQQSVSLALSLDF 646 YNWRKGEDDTQQSVSLALSLDF Sbjct: 611 YNWRKGEDDTQQSVSLALSLDF 632 >5XTU-A nrPDB Length = 360 Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust. Identities = 77/332 (23%), Positives = 124/332 (37%), Gaps = 30/332 (9%) Query: 23 QAAPSPYSTLVVFGDSLSD---------------AGQFPDPAGPAGSTSRFTNRVGPTYQ 67 +A + + + FGDSLSD +G+ A RF+N GP + Sbjct: 29 KAMVAEFDRITNFGDSLSDIGNKHMITVDMNQATSGKIGIRADKPNFDGRFSN--GPVWT 86 Query: 68 NGSGEIFGPTAPMLLGNQLG--IAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQ-IYD 124 AP+ ++ + D A + G NWAVGG + + Sbjct: 87 EYLAGFLAKPAPVRGHGEIDSQVVLKDQAGKQITYHYHHNALPGTNWAVGGAMSGLGNFL 146 Query: 125 SITAANGSLIERDNTLLRSRDGYLVDR-ARQGLGADPNALYYITGGGNDFLQGRILNDVQ 183 I AANG + +L + + R A +G + Y++G N + D Sbjct: 147 DIDAANGFTAKSGLDVLTNTGQQIKLRIANKGQFTGNELVSYMSGTNNLWFTLFGDLDQT 206 Query: 184 AQQAAGRLVDSVQALQQAGARYIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQ 243 +AAG + ++ L AGA+ ++ +PD P F G Q ++ + N L A Sbjct: 207 GNKAAGFALTDIETLIDAGAKQVLAANIPDFVDAP-WFAGQ-QKKTTRFIQSHNQALKAG 264 Query: 244 LSQAGANVIPLNIPLLLKEGMANPAS-----FGLAADQNLIGTCFSGNGCTMNPTYGING 298 L Q A + I + N S G D+ L T + G +Y Sbjct: 265 LDQLAAAHPDVEIYYFDAFDLFNKVSNEVKTKGKYQDKELAITLTNVTGEAY--SYATGK 322 Query: 299 STPDPSKLLFNDSVHPTITGQRLIADYTYSLL 330 P++ LF D +HPT +++A SL+ Sbjct: 323 VIAQPNRNLFWDGLHPTTAMHKIMAKEAASLV 354 >5ZJN-A nrPDB Length = 253 Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 24/152 (15%) Query: 432 SDYRMNSYMASAFVQYQENRWWADAA-------LTGGYLDYDDLKRKFALG---GGERSE 481 S Y+ +M F+ +E + + + +TG LD D A+ G ++ Sbjct: 10 SLYKKAGFMRKNFLNIEELKRFLNGQTVVSIQPVTGSPLDKTDFIVAMAIAVEQAGAKAL 69 Query: 482 KGDTNGHLWAFSARLGYDIA-----QQADSPWHLSPFVSADYARVEVDGYSEKGASATAL 536 + + ++ A SA + I DSP ++PFVS +VDG + GA+ A Sbjct: 70 RIEGVSNVAAVSAAVTIPIIGIVKRDLPDSPVRITPFVS------DVDGLANAGATVIAF 123 Query: 537 DYDDQKR--SSKRLGAGLQGKYAFG-SDTQLF 565 D ++ R S +R+ ++ F +D F Sbjct: 124 DATNRTRPESRERIAQAIKNTGCFAMADCSTF 155 >3RBH-A nrPDB Length = 479 Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 392 SGDGNGYNLTLGGSYRIDEAWRAGV 416 SGD N + + LG + IDE W+AGV Sbjct: 293 SGDVNAFGVDLGLRWNIDEQWKAGV 317 >3FCX-A nrPDB Length = 282 Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 409 DEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAFVQ 446 DE+W G AGFY E K ++YRM SY+ Q Sbjct: 94 DESWDFGTGAGFYVDATEDPWK-TNYRMYSYVTEELPQ 130 >2Y0D-A nrPDB Length = 478 Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Query: 128 AANGSLIERDNTL-----LRSRDGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDV 182 AAN L R + + L R G ++ R+G+G+DP Y+ G + DV Sbjct: 224 AANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDV 283 Query: 183 QAQQAAG----------RLVDSVQALQQ-AGARYIVVWLLPDL-GLTPATFGGPLQPFAS 230 +A + V SV A Q+ A IV DL G T A +G +P Sbjct: 284 EALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTD 343 Query: 231 QLSGTFNAELTAQLSQAGANV 251 + + EL A+L GA + Sbjct: 344 DMREAPSRELIAELLSRGARI 364 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3KVN-X nrPDB 1318 0.0 Sequences not found previously or not previously below threshold: 5XTU-A nrPDB 47 3e-05 3RBH-A nrPDB 34 0.19 5ZJN-A nrPDB 33 0.36 4DCB-A nrPDB 33 0.36 3FCX-A nrPDB 32 0.73 2Y0D-A nrPDB 32 0.90 6ENE-A nrPDB 30 2.8 2R88-A nrPDB 30 3.4 5JH8-A nrPDB 30 4.0 1IS2-A nrPDB 30 4.7 1K3I-A nrPDB 29 5.3 2LC7-A nrPDB 29 7.5 1RY4-A nrPDB 29 7.5 4JNJ-A nrPDB 29 8.0 5A7M-A nrPDB 28 9.5 >3KVN-X nrPDB Length = 632 Score = 1318 bits (3412), Expect = 0.0, Method: Composition-based stats. Identities = 622/622 (100%), Positives = 622/622 (100%) Query: 25 APSPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGN 84 APSPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGN Sbjct: 11 APSPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGN 70 Query: 85 QLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSR 144 QLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSR Sbjct: 71 QLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSR 130 Query: 145 DGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQAGAR 204 DGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQAGAR Sbjct: 131 DGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQAGAR 190 Query: 205 YIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLLKEGM 264 YIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLLKEGM Sbjct: 191 YIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLLKEGM 250 Query: 265 ANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIAD 324 ANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIAD Sbjct: 251 ANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIAD 310 Query: 325 YTYSLLSAPWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQRLDF 384 YTYSLLSAPWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQRLDF Sbjct: 311 YTYSLLSAPWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQRLDF 370 Query: 385 DSQDSAASGDGNGYNLTLGGSYRIDEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAF 444 DSQDSAASGDGNGYNLTLGGSYRIDEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAF Sbjct: 371 DSQDSAASGDGNGYNLTLGGSYRIDEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAF 430 Query: 445 VQYQENRWWADAALTGGYLDYDDLKRKFALGGGERSEKGDTNGHLWAFSARLGYDIAQQA 504 VQYQENRWWADAALTGGYLDYDDLKRKFALGGGERSEKGDTNGHLWAFSARLGYDIAQQA Sbjct: 431 VQYQENRWWADAALTGGYLDYDDLKRKFALGGGERSEKGDTNGHLWAFSARLGYDIAQQA 490 Query: 505 DSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQL 564 DSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQL Sbjct: 491 DSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQL 550 Query: 565 FAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGG 624 FAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGG Sbjct: 551 FAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGG 610 Query: 625 YNWRKGEDDTQQSVSLALSLDF 646 YNWRKGEDDTQQSVSLALSLDF Sbjct: 611 YNWRKGEDDTQQSVSLALSLDF 632 >5XTU-A nrPDB Length = 360 Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 124/332 (37%), Gaps = 30/332 (9%) Query: 23 QAAPSPYSTLVVFGDSLSD---------------AGQFPDPAGPAGSTSRFTNRVGPTYQ 67 +A + + + FGDSLSD +G+ A RF+N GP + Sbjct: 29 KAMVAEFDRITNFGDSLSDIGNKHMITVDMNQATSGKIGIRADKPNFDGRFSN--GPVWT 86 Query: 68 NGSGEIFGPTAPMLLGNQLG--IAPGDLAASTSPVNAQQGIADGNNWAVGGYRTD-QIYD 124 AP+ ++ + D A + G NWAVGG + + Sbjct: 87 EYLAGFLAKPAPVRGHGEIDSQVVLKDQAGKQITYHYHHNALPGTNWAVGGAMSGLGNFL 146 Query: 125 SITAANGSLIERDNTLLRSRDGYLVDR-ARQGLGADPNALYYITGGGNDFLQGRILNDVQ 183 I AANG + +L + + R A +G + Y++G N + D Sbjct: 147 DIDAANGFTAKSGLDVLTNTGQQIKLRIANKGQFTGNELVSYMSGTNNLWFTLFGDLDQT 206 Query: 184 AQQAAGRLVDSVQALQQAGARYIVVWLLPDLGLTPATFGGPLQPFASQLSGTFNAELTAQ 243 +AAG + ++ L AGA+ ++ +PD P F G Q ++ + N L A Sbjct: 207 GNKAAGFALTDIETLIDAGAKQVLAANIPDFVDAP-WFAGQ-QKKTTRFIQSHNQALKAG 264 Query: 244 LSQAGANVIPLNIPLLLKEGMANPASF-----GLAADQNLIGTCFSGNGCTMNPTYGING 298 L Q A + I + N S G D+ L T + G +Y Sbjct: 265 LDQLAAAHPDVEIYYFDAFDLFNKVSNEVKTKGKYQDKELAITLTNVTGEAY--SYATGK 322 Query: 299 STPDPSKLLFNDSVHPTITGQRLIADYTYSLL 330 P++ LF D +HPT +++A SL+ Sbjct: 323 VIAQPNRNLFWDGLHPTTAMHKIMAKEAASLV 354 >3RBH-A nrPDB Length = 479 Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 392 SGDGNGYNLTLGGSYRIDEAWRAGVAAGFYRQKLEAGAKDSD 433 SGD N + + LG + IDE W+AGV G+ R G KD + Sbjct: 293 SGDVNAFGVDLGLRWNIDEQWKAGV--GYARG--SGGGKDGE 330 >5ZJN-A nrPDB Length = 253 Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 21/131 (16%) Query: 432 SDYRMNSYMASAFVQYQENRWWADAA-------LTGGYLDYDDLKRKFALG---GGERSE 481 S Y+ +M F+ +E + + + +TG LD D A+ G ++ Sbjct: 10 SLYKKAGFMRKNFLNIEELKRFLNGQTVVSIQPVTGSPLDKTDFIVAMAIAVEQAGAKAL 69 Query: 482 KGDTNGHLWAFSARLGYDIA-----QQADSPWHLSPFVSADYARVEVDGYSEKGASATAL 536 + + ++ A SA + I DSP ++PFVS +VDG + GA+ A Sbjct: 70 RIEGVSNVAAVSAAVTIPIIGIVKRDLPDSPVRITPFVS------DVDGLANAGATVIAF 123 Query: 537 DYDDQKRSSKR 547 D ++ R R Sbjct: 124 DATNRTRPESR 134 >4DCB-A nrPDB Length = 297 Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 11/78 (14%) Query: 361 DWENWQNVGQWRGFVGGGGQRLDFDSQDSAASGDGNGYNLTLGGSYRIDEAWRAGVAAGF 420 DW N +N +W D S + N Y+L + G DE ++AG+ AG+ Sbjct: 82 DWMN-ENQSEWT----------DHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGY 130 Query: 421 YRQKLEAGAKDSDYRMNS 438 + A Y N+ Sbjct: 131 QETRFSWTATGGSYSYNN 148 >3FCX-A nrPDB Length = 282 Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 409 DEAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAFVQ 446 DE+W G AGFY E K ++YRM SY+ Q Sbjct: 94 DESWDFGTGAGFYVDATEDPWK-TNYRMYSYVTEELPQ 130 >2Y0D-A nrPDB Length = 478 Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Query: 128 AANGSLIERDNTL-----LRSRDGYLVDRARQGLGADPNALYYITGGGNDFLQGRILNDV 182 AAN L R + + L R G ++ R+G+G+DP Y+ G + DV Sbjct: 224 AANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDV 283 Query: 183 QAQQAAG----------RLVDSVQALQQ-AGARYIVVWLLPDL-GLTPATFGGPLQPFAS 230 +A + V SV A Q+ A IV DL G T A +G +P Sbjct: 284 EALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTD 343 Query: 231 QLSGTFNAELTAQLSQAGANV 251 + + EL A+L GA + Sbjct: 344 DMREAPSRELIAELLSRGARI 364 >6ENE-A nrPDB Length = 329 Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 30/180 (16%) Query: 474 LGGGERSEKGDTNGHLWAFSARLGYDIAQQADSPWHLSPFVSADYARVEVD---GYSEKG 530 LG ER++ +NG WA S L YD D + + +AD + + G +K Sbjct: 153 LGKNERTDALRSNGDGWATS--LSYDF----DGFGIVGAYGAADRTNAQQNLQWGKGDKA 206 Query: 531 AS-ATALDYD----------DQKRSSKRLGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQ 579 AT L YD + R++ RL G F + TQ F+ A +Y+ D Sbjct: 207 EQWATGLKYDANNIYLAALYGEMRNAARLDNG------FANKTQDFSVVA---QYQFDF- 256 Query: 580 DLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNWRKGEDDTQQSVS 639 L S+ +EG +D++N + +G + +S Y + +DD + ++ Sbjct: 257 GLRPSIAYYKSKAKDVEGIGDEDYINYIDIGATYYFNKNMSTYVDYQINQLKDDNKLGIN 316 >2R88-A nrPDB Length = 426 Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Query: 399 NLTLGGSYRIDEAWRAGVA--AGFYRQKLEAGAKD 431 NL L G+YR++ AW G+ A + R K+E A D Sbjct: 126 NLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGD 160 >5JH8-A nrPDB Length = 317 Score = 29.7 bits (65), Expect = 4.0, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 18/107 (16%) Query: 496 LGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALD------YDDQKRSSKRLG 549 + YD +A W P +D+ ++D E+ +A L+ YD KR G Sbjct: 176 MSYD---EAIPAWDPGPVAGSDWMEDDLDYAVERVPAAKILNGIPAYGYD-----WKRPG 227 Query: 550 AGLQGKYAFGSDTQ-LFAEYAHEREYEDDTQDLTMSLNSLPGNRFTL 595 G + DTQ L A Y + Y+ T LT + + G+R T+ Sbjct: 228 ---DGGMLYWKDTQALIARYGAQPRYDAGTHSLTFNYGAADGSRHTV 271 >1IS2-A nrPDB Length = 661 Score = 29.7 bits (65), Expect = 4.7, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 162 ALYYITGGGNDFLQGRILNDVQAQQAAGRLVD 193 +LY I+ G DFL+G I+ Q Q R+++ Sbjct: 563 SLYGISQKGGDFLEGSIITGAQLSQVNARILE 594 >1K3I-A nrPDB Length = 656 Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 404 GSYRID-EAWRAGVAAGFYRQKLEAGAKDSDYRMNSYMASAFVQYQENRWWADAALTGGY 462 G YR D AW G G Q + A + Y S + + Q NR A A+ G Sbjct: 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 403 Query: 463 LDYDDLKRKFALGGGE---RSEKGDTNGHL 489 + YD +K K GG + TN H+ Sbjct: 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHI 433 >2LC7-A nrPDB Length = 102 Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 88 IAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLI 134 + PG LA ST + + + N V G DQ+ D + A + +LI Sbjct: 47 LVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLI 93 >1RY4-A nrPDB Length = 128 Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 88 IAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLI 134 + PG LA ST + + + N V G DQ+ D + A + +LI Sbjct: 73 LVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLI 119 >4JNJ-A nrPDB Length = 115 Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 23/108 (21%) Query: 273 AADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIADYTYSLLSA 332 A+ + GT ++ +G T T G +G+ +TGQ ++ Sbjct: 1 GAEAGITGTWYNQSGSTFTVTAGADGN----------------LTGQYENRAQGTGCQNS 44 Query: 333 PWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQ 380 P+ LT G + E R +W EN + +WRG GG + Sbjct: 45 PYTLT-------GRYNGTKLEWRVEWNNSTENCHSRTEWRGQYQGGAE 85 >5A7M-A nrPDB Length = 766 Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 497 GYDIAQQADSPWHLS-PFVSADYARVEVD-GYSEKGASATALDYDDQKRSSKRLG 549 G DI PWHL+ FV+ + +R E++ + A+ L Y D+K + LG Sbjct: 319 GTDIDCGQTYPWHLNESFVAGEVSRGEIERSVTRLYANLVRLGYFDKKNQYRSLG 373 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.315 0.134 0.403 Lambda K H 0.267 0.0414 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,594,049 Number of Sequences: 36641 Number of extensions: 1315846 Number of successful extensions: 2826 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 31 Number of HSP's that attempted gapping in prelim test: 2807 Number of HSP's gapped (non-prelim): 44 length of query: 646 length of database: 10,336,785 effective HSP length: 103 effective length of query: 543 effective length of database: 6,562,762 effective search space: 3563579766 effective search space used: 3563579766 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 62 (28.5 bits)