BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= O15273
         (167 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2F8V-T nrPDB                                                          304   1e-83
3G5B-A nrPDB                                                           33   0.081
2GWH-A nrPDB                                                           30   0.63 
1IC8-A nrPDB                                                           28   1.6  
5H7C-A nrPDB                                                           27   3.3  
2CQS-A nrPDB                                                           27   3.9  

>2F8V-T nrPDB
          Length = 167

 Score =  304 bits (778), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/167 (97%), Positives = 162/167 (97%)

Query: 1   MATSELSCEVSEENCERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHQQGQCQVL 60
           MATSELS EVSEEN ERREAFWAEWKDLTLSTRPEEG SLHEEDTQRHETYHQQGQ QVL
Sbjct: 1   MATSELSSEVSEENSERREAFWAEWKDLTLSTRPEEGSSLHEEDTQRHETYHQQGQSQVL 60

Query: 61  VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE 120
           VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE
Sbjct: 61  VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE 120

Query: 121 TALGGQCVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167
           TALGGQ VDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG
Sbjct: 121 TALGGQSVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167


>3G5B-A nrPDB
          Length = 405

 Score = 32.7 bits (73), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 45  TQRHETYHQQGQCQVLVQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKE 104
           T   ET +    CQ+  +    L+ ++G      + Y     + L L IF PA   + + 
Sbjct: 111 TLDEETLNTPCYCQLEAKSCHILLDQLGTYVFTGESYSRSAVKRLQLAIFAPALCTSLEY 170

Query: 105 ER-----EDTPIQLQELLALETALGGQCVD 129
                  EDTP  L+E+L LE  LGG  V+
Sbjct: 171 SLRVYCLEDTPAALKEVLELERTLGGYLVE 200


>2GWH-A nrPDB
          Length = 298

 Score = 29.6 bits (65), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 13  ENCERREAFW---AEWKDLTLSTRPEEGCSLHEEDTQ--RHETYHQQGQCQVLVQRSPWL 67
           + C+  +  W   A+  DL +ST P+ G +  +E  +  ++E   ++ +     QR P+L
Sbjct: 26  DTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFL 85

Query: 68  MMRMGILGRGL-QEYQLPYQRVL 89
            M++  LG GL Q + +P  R+L
Sbjct: 86  EMKIPSLGSGLEQAHAMPSPRIL 108


>1IC8-A nrPDB
          Length = 194

 Score = 28.5 bits (62), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 49  ETYHQQGQCQVLVQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEERED 108
           E  HQ+   + L+Q  PW + +M  +   LQ++ +P + V+       + +  ++   + 
Sbjct: 12  EAAHQKAVVETLLQEDPWRVAKM--VKSYLQQHNIPQREVVDTTGLNQSHL--SQHLNKG 67

Query: 109 TPIQLQELLALET 121
           TP++ Q+  AL T
Sbjct: 68  TPMKTQKRAALYT 80


>5H7C-A nrPDB
          Length = 404

 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 80  EYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALETALG-GQCV---------- 128
           E Q  +  +L LP     +  A  +  +D P Q   LLA   +L   Q V          
Sbjct: 205 EQQSAFYEILSLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEA 264

Query: 129 -DRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167
            D++EV EI K+L  +   S    L   + + +++ A+  
Sbjct: 265 TDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEA 304



 Score = 26.9 bits (58), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 12/101 (11%)

Query: 79  QEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALETALG-GQCV--------- 128
           +E Q  +  +L LP     +  A  +  +D P Q   LLA   +L   Q V         
Sbjct: 8   KEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKE 67

Query: 129 --DRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167
             D++EV EI K+L  +   S    L   + + +++ A+  
Sbjct: 68  ATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEA 108


>2CQS-A nrPDB
          Length = 842

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 59  VLVQRSPWLMMRMGILGRGLQEYQLPYQRVLP 90
           +    +PW+++   ++GRG Q +   Y+R+ P
Sbjct: 683 IFCHNNPWVIIAETVVGRGAQAFDY-YKRITP 713


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2F8V-T nrPDB                                                          277   2e-75

Sequences not found previously or not previously below threshold:

2GWH-A nrPDB                                                           38   0.002
3G5B-A nrPDB                                                           37   0.005
4MKI-B nrPDB                                                           30   0.65 
3K5P-A nrPDB                                                           29   0.75 
1IC8-A nrPDB                                                           29   1.1  
5H7C-A nrPDB                                                           28   1.4  
3MDY-A nrPDB                                                           28   1.9  
2ZZE-A nrPDB                                                           28   2.0  
6EM1-o nrPDB                                                           28   2.4  
5H7B-A nrPDB                                                           27   5.0  


CONVERGED!
>2F8V-T nrPDB
          Length = 167

 Score =  277 bits (708), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/167 (97%), Positives = 162/167 (97%)

Query: 1   MATSELSCEVSEENCERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHQQGQCQVL 60
           MATSELS EVSEEN ERREAFWAEWKDLTLSTRPEEG SLHEEDTQRHETYHQQGQ QVL
Sbjct: 1   MATSELSSEVSEENSERREAFWAEWKDLTLSTRPEEGSSLHEEDTQRHETYHQQGQSQVL 60

Query: 61  VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE 120
           VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE
Sbjct: 61  VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE 120

Query: 121 TALGGQCVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167
           TALGGQ VDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG
Sbjct: 121 TALGGQSVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167


>2GWH-A nrPDB
          Length = 298

 Score = 38.1 bits (87), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 21  FWAEWKDLTLSTRPEEGCSLHEEDTQ--RHETYHQQGQCQVLVQRSPWLMMRMGILGRGL 78
           F A+  DL +ST P+ G +  +E  +  ++E   ++ +     QR P+L M++  LG GL
Sbjct: 37  FQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGL 96

Query: 79  -QEYQLPYQRV----LPLPIFTPA 97
            Q + +P  R+    LP  +  P+
Sbjct: 97  EQAHAMPSPRILKTHLPFHLLPPS 120


>3G5B-A nrPDB
          Length = 405

 Score = 36.6 bits (83), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 19  EAFWAEWKDLTLSTRPEEGCSLHEED--TQRHETYHQQGQCQVLVQRSPWLMMRMGILGR 76
           E    +W    L T+  +G   H E+  T   ET +    CQ+  +    L+ ++G    
Sbjct: 87  EVIAGDWI-FQLKTQAHQG---HWEEVVTLDEETLNTPCYCQLEAKSCHILLDQLGTYVF 142

Query: 77  GLQEYQLPYQRVLPLPIFTPAKMGATKEER-----EDTPIQLQELLALETALGGQCVD 129
             + Y     + L L IF PA   + +        EDTP  L+E+L LE  LGG  V+
Sbjct: 143 TGESYSRSAVKRLQLAIFAPALCTSLEYSLRVYCLEDTPAALKEVLELERTLGGYLVE 200


>4MKI-B nrPDB
          Length = 298

 Score = 29.7 bits (65), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 80  EYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALETAL---------GGQCVDR 130
           EYQL  + V     F P+ +G ++EE ++   +  E++ +   L         GGQ   R
Sbjct: 97  EYQLFEETVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQK-RR 155

Query: 131 QEVAEITKQLPPVVPVSKPGA 151
             +A I    P ++ + +P A
Sbjct: 156 VAIAGILAMRPKILILDEPTA 176


>3K5P-A nrPDB
          Length = 416

 Score = 29.3 bits (64), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 74  LGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALETALGGQCVDRQEV 133
           L + LQE  L    +   P+  PA  G    ER  TP+Q  E + L   +GG   + QE 
Sbjct: 254 LAKVLQEGHLAGAAIDVFPV-EPASNG----ERFSTPLQGLENVILTPHIGGSTEEAQER 308

Query: 134 --AEITKQL 140
              E+T++L
Sbjct: 309 IGTEVTRKL 317


>1IC8-A nrPDB
          Length = 194

 Score = 28.9 bits (63), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 43  EDTQRHETYHQQGQCQVLVQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGAT 102
           E+    E  HQ+   + L+Q  PW + +M  +   LQ++ +P + V+       + +  +
Sbjct: 6   ENLSPEEAAHQKAVVETLLQEDPWRVAKM--VKSYLQQHNIPQREVVDTTGLNQSHL--S 61

Query: 103 KEEREDTPIQLQELLALET 121
           +   + TP++ Q+  AL T
Sbjct: 62  QHLNKGTPMKTQKRAALYT 80


>5H7C-A nrPDB
          Length = 404

 Score = 28.5 bits (62), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 80  EYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALETAL------------GGQC 127
           E Q  +  +L LP     +  A  +  +D P Q   LLA   +L              + 
Sbjct: 205 EQQSAFYEILSLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEA 264

Query: 128 VDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167
            D++EV EI K+L  +   S    L   + + +++ A+  
Sbjct: 265 TDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEA 304



 Score = 28.1 bits (61), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 79  QEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALETAL------------GGQ 126
           +E Q  +  +L LP     +  A  +  +D P Q   LLA   +L              +
Sbjct: 8   KEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKE 67

Query: 127 CVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG 167
             D++EV EI K+L  +   S    L   + + +++ A+  
Sbjct: 68  ATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEA 108


>3MDY-A nrPDB
          Length = 337

 Score = 28.1 bits (61), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 66  WLMMRMGILGRGLQEYQLPYQRVLP 90
           W + R  + G  ++EYQLPY  ++P
Sbjct: 243 WEVARRCVSGGIVEEYQLPYHDLVP 267


>2ZZE-A nrPDB
          Length = 752

 Score = 28.1 bits (61), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 67  LMMRMGILGRGLQEY--QLPYQRVLPLPIFTPAKMGATKEEREDT---PIQLQELLALET 121
           L++R  I  R L+E   ++P   ++ L I    K     +E ED     I+L+E    ET
Sbjct: 369 LLIRKSI--RHLRELGLEVPLSEIVALHIKELHKTFPEFKEMEDIILEMIELEEKKYAET 426

Query: 122 ALGGQCVDRQEVAEITKQLPPVVPVSK 148
              G  + R+E+A++ K+    +PV K
Sbjct: 427 LRRGSDLVRREIAKLKKKGIKEIPVEK 453


>6EM1-o nrPDB
          Length = 220

 Score = 27.7 bits (60), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 95  TPAKMGATKEEREDTPIQLQELLALET 121
           T  K   TK+  E+ PIQ +E LALET
Sbjct: 8   TSTKETVTKQPTEEKPIQEKEELALET 34


>5H7B-A nrPDB
          Length = 237

 Score = 26.6 bits (57), Expect = 5.0,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 14/160 (8%)

Query: 14  NCERREAFWAEWKDLTLSTRP--EEGCSLHEEDTQRHETYH----QQGQCQVLVQR---S 64
           N E+R AF    KD    +     E   L+E+    +E  H     + Q    +Q     
Sbjct: 69  NEEQRNAFIQSLKDDPSQSANLLAEAKKLNEQQAAFYEILHLPNLNEEQRNAFIQSLKDD 128

Query: 65  PWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALETALG 124
           P     +    + L E Q  +  +L LP     +  A  +  +D P Q   LLA    L 
Sbjct: 129 PSQSANLLAEAKKLNEQQAAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLN 188

Query: 125 GQCVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEA 164
            Q     E+  +     P +   +  A  +SL    SQ A
Sbjct: 189 EQQAAFYEILHL-----PNLNEEQRNAFIQSLKDDPSQSA 223


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.303    0.133    0.399 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,037,099
Number of Sequences: 36641
Number of extensions: 220504
Number of successful extensions: 578
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 35
length of query: 167
length of database: 10,336,785
effective HSP length: 90
effective length of query: 77
effective length of database: 7,039,095
effective search space: 542010315
effective search space used: 542010315
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.8 bits)
S2: 55 (25.8 bits)