BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= O14558 (160 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5LTW-C nrPDB 294 1e-80 2KLR-A nrPDB 144 1e-35 6F2R-D nrPDB 103 4e-23 6F2R-C nrPDB 103 4e-23 6F2R-T nrPDB 69 6e-13 4YDZ-A nrPDB 60 4e-10 5OQL-X nrPDB 28 1.8 2BA1-H nrPDB 28 1.9 4ZJA-A nrPDB 28 2.0 3SWO-A nrPDB 27 3.9 3PM6-A nrPDB 27 4.3 3T0Q-A nrPDB 27 5.1 3K5T-A nrPDB 26 7.6 >5LTW-C nrPDB Length = 149 Score = 294 bits (753), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 149/149 (100%), Positives = 149/149 (100%) Query: 1 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV 60 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV Sbjct: 1 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV 60 Query: 61 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR 120 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR Sbjct: 61 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR 120 Query: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPA 149 YRLPPGVDPAAVTSALSPEGVLSIQAAPA Sbjct: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPA 149 >2KLR-A nrPDB Length = 175 Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 11/159 (6%) Query: 3 IPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV-- 60 + + + W+RR P +P RLFDQ FGE LLE++L T+L+P+YLR PS Sbjct: 1 MDIAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFPTS-TSLSPFYLRPPSFLR 56 Query: 61 -----ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAR 115 ++++ + FSV LDVKHFSPEE+ VKV+G+ +EVH +HEER DEHGF++R Sbjct: 57 APSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISR 116 Query: 116 EFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAP 154 EFHR+YR+P VDP +TS+LS +GVL++ P Sbjct: 117 EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGP 155 >6F2R-D nrPDB Length = 182 Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/131 (43%), Positives = 77/131 (58%), Gaps = 8/131 (6%) Query: 22 LSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLR------APSVALPVAQVPTDPGHFS 75 + P RL +QRFGEGLL E+ L PT YY+R +++ G F Sbjct: 18 FANPSRLGEQRFGEGLLPEEI--LTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQ 75 Query: 76 VLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSA 135 LDV HF+P+E+ V+ V +EV ARH +R D HGFV+REF R Y LP VDP V +A Sbjct: 76 AFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAA 135 Query: 136 LSPEGVLSIQA 146 LS +G+L+++A Sbjct: 136 LSHDGILNLEA 146 >6F2R-C nrPDB Length = 203 Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/131 (43%), Positives = 77/131 (58%), Gaps = 8/131 (6%) Query: 22 LSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLR------APSVALPVAQVPTDPGHFS 75 + P RL +QRFGEGLL E+ L PT YY+R +++ G F Sbjct: 39 FANPSRLGEQRFGEGLLPEEI--LTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQ 96 Query: 76 VLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSA 135 LDV HF+P+E+ V+ V +EV ARH +R D HGFV+REF R Y LP VDP V +A Sbjct: 97 AFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAA 156 Query: 136 LSPEGVLSIQA 146 LS +G+L+++A Sbjct: 157 LSHDGILNLEA 167 >6F2R-T nrPDB Length = 161 Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 48/74 (64%) Query: 73 HFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAV 132 HF +LLDV F PE+I ++ + + A+H R DEHGF++R F R+Y+LP GV+ + Sbjct: 70 HFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDL 129 Query: 133 TSALSPEGVLSIQA 146 ++ L +G+L ++ Sbjct: 130 SAVLCHDGILVVEV 143 >4YDZ-A nrPDB Length = 159 Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 21/125 (16%) Query: 42 LAALCPTT------------LAPYYLRAPS--------VALPVAQVPTDPGHFSVLLDVK 81 +++LCP T + PY+ + S V + +V F V LDV Sbjct: 1 MSSLCPYTGRPTGLFRDFEDMMPYWAQRHSMLNNFNNIVPQQLNEVENTAQKFCVKLDVA 60 Query: 82 HFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGV 141 F PEE+ V + G + + HE + EHGF R F R++ LP VD A + + ++ EG Sbjct: 61 AFKPEELKVNLEGHVLTIEGHHEVKT-EHGFSKRSFTRQFTLPKDVDLAHIHTVINKEGQ 119 Query: 142 LSIQA 146 ++I A Sbjct: 120 MTIDA 124 >5OQL-X nrPDB Length = 630 Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%) Query: 64 VAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAR-------E 116 +A V T GH +LD+ E VG + AR+ + P+E V R Sbjct: 320 LAYVETLFGHQDEILDIDALGQERCVS--VGAR-DRTARYWKVPEESQLVFRGGGEGGSS 376 Query: 117 FHRRYRLPPGVDPAA 131 ++++LPPG+DPA+ Sbjct: 377 NTKKHKLPPGMDPAS 391 >2BA1-H nrPDB Length = 259 Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 85 PEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPEG 140 PE+I V + ++V R ER D GF EF R+ + P V A SAL G Sbjct: 2 PEDILVDIKRDYVLSKLRDNERIDGRGF--DEF-RKVEIIPNVIEKAEGSALVKLG 54 >4ZJA-A nrPDB Length = 147 Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Query: 70 DPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERP--DEHGFVAR-----EFHRRYR 122 D ++ + + V + EE+ ++ VG ++ + +H E D+ ++ R +F + Sbjct: 50 DANNYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKADFQLSFS 109 Query: 123 LPPGVDPAAVTSALSPEGVLSIQ 145 LP + A V +A +G+L ++ Sbjct: 110 LP---EHAKVNNAKLEQGLLLVE 129 >3SWO-A nrPDB Length = 399 Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 9/48 (18%) Query: 107 PDEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAP 154 D GF A E HR+ L A+VTS L VL PASAQ P Sbjct: 203 TDTPGFTANEIHRKLSL-----RASVTSEL----VLDNVRLPASAQLP 241 >3PM6-A nrPDB Length = 306 Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 43 AALCPTTLAPYYLRAPSVALPVAQVPT----DPGHFSVLLDVKHFSPEE 87 AA P TL + + P + A + +PG S+++D+ HFS EE Sbjct: 80 AASVPITLHLDHAQDPEIIKRAADLSRSETHEPGFDSIMVDMSHFSKEE 128 >3T0Q-A nrPDB Length = 349 Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 20/45 (44%) Query: 48 TTLAPYYLRAPSVALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKV 92 T L Y L S L +P DP H S L+ F+ + + K+ Sbjct: 302 TYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKI 346 >3K5T-A nrPDB Length = 731 Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Query: 53 YYLRAPSVALPVAQVPTDPGHFS---VLLDVKHF-SPEEIAVKVVGEHVEV 99 Y+L + L V TD GH++ V + K + SPEE+A K V+V Sbjct: 190 YFLHPTGLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDV 240 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5LTW-C nrPDB 210 2e-55 2KLR-A nrPDB 206 4e-54 6F2R-D nrPDB 176 3e-45 6F2R-C nrPDB 176 3e-45 4YDZ-A nrPDB 141 1e-34 6F2R-T nrPDB 114 2e-26 Sequences not found previously or not previously below threshold: 4ZJA-A nrPDB 36 0.007 3W1Z-A nrPDB 32 0.086 4PIQ-A nrPDB 30 0.36 2BA1-H nrPDB 29 0.87 3MSU-A nrPDB 29 1.0 3QFW-A nrPDB 29 1.5 4B2G-A nrPDB 28 1.9 2R3S-A nrPDB 28 2.1 6CGV-M nrPDB 27 3.6 CONVERGED! >5LTW-C nrPDB Length = 149 Score = 210 bits (535), Expect = 2e-55, Method: Composition-based stats. Identities = 149/149 (100%), Positives = 149/149 (100%) Query: 1 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV 60 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV Sbjct: 1 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV 60 Query: 61 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR 120 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR Sbjct: 61 ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRR 120 Query: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPA 149 YRLPPGVDPAAVTSALSPEGVLSIQAAPA Sbjct: 121 YRLPPGVDPAAVTSALSPEGVLSIQAAPA 149 >2KLR-A nrPDB Length = 175 Score = 206 bits (524), Expect = 4e-54, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 11/159 (6%) Query: 3 IPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSV-- 60 + + + W+RR P +P RLFDQ FGE LLE++L T+L+P+YLR PS Sbjct: 1 MDIAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFPTS-TSLSPFYLRPPSFLR 56 Query: 61 -----ALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAR 115 ++++ + FSV LDVKHFSPEE+ VKV+G+ +EVH +HEER DEHGF++R Sbjct: 57 APSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISR 116 Query: 116 EFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAP 154 EFHR+YR+P VDP +TS+LS +GVL++ P Sbjct: 117 EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGP 155 >6F2R-D nrPDB Length = 182 Score = 176 bits (447), Expect = 3e-45, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 8/133 (6%) Query: 22 LSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRA------PSVALPVAQVPTDPGHFS 75 + P RL +QRFGEGLL E+ L PT YY+R +++ G F Sbjct: 18 FANPSRLGEQRFGEGLLPEEI--LTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQ 75 Query: 76 VLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSA 135 LDV HF+P+E+ V+ V +EV ARH +R D HGFV+REF R Y LP VDP V +A Sbjct: 76 AFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAA 135 Query: 136 LSPEGVLSIQAAP 148 LS +G+L+++A Sbjct: 136 LSHDGILNLEAPR 148 >6F2R-C nrPDB Length = 203 Score = 176 bits (447), Expect = 3e-45, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 8/133 (6%) Query: 22 LSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRA------PSVALPVAQVPTDPGHFS 75 + P RL +QRFGEGLL E+ L PT YY+R +++ G F Sbjct: 39 FANPSRLGEQRFGEGLLPEEI--LTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQ 96 Query: 76 VLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSA 135 LDV HF+P+E+ V+ V +EV ARH +R D HGFV+REF R Y LP VDP V +A Sbjct: 97 AFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAA 156 Query: 136 LSPEGVLSIQAAP 148 LS +G+L+++A Sbjct: 157 LSHDGILNLEAPR 169 >4YDZ-A nrPDB Length = 159 Score = 141 bits (355), Expect = 1e-34, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 21/127 (16%) Query: 42 LAALCPTT------------LAPYYLRAPS--------VALPVAQVPTDPGHFSVLLDVK 81 +++LCP T + PY+ + S V + +V F V LDV Sbjct: 1 MSSLCPYTGRPTGLFRDFEDMMPYWAQRHSMLNNFNNIVPQQLNEVENTAQKFCVKLDVA 60 Query: 82 HFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGV 141 F PEE+ V + G + + HE + EHGF R F R++ LP VD A + + ++ EG Sbjct: 61 AFKPEELKVNLEGHVLTIEGHHEVKT-EHGFSKRSFTRQFTLPKDVDLAHIHTVINKEGQ 119 Query: 142 LSIQAAP 148 ++I A Sbjct: 120 MTIDAPK 126 >6F2R-T nrPDB Length = 161 Score = 114 bits (286), Expect = 2e-26, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 55 LRAPSVALPVAQVPTD-PGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFV 113 ++P V P + HF +LLDV F PE+I ++ + + A+H R DEHGF+ Sbjct: 51 AQSPPVDSAAETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFI 110 Query: 114 AREFHRRYRLPPGVDPAAVTSALSPEGVLSIQA 146 +R F R+Y+LP GV+ +++ L +G+L ++ Sbjct: 111 SRSFTRQYKLPDGVEIKDLSAVLCHDGILVVEV 143 >4ZJA-A nrPDB Length = 147 Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 23/151 (15%) Query: 14 RASAPLPGLSAPGRLFDQRFGE-GLLEAELAALCPTTLAPYYLRAPSVALPVAQVPTDPG 72 R + LP + LF RF L ++L P P Y L D Sbjct: 5 RTLSALPVFAD--SLFSDRFNRIDRLFSQLTGDTPVAATPAY------DLQ----KRDAN 52 Query: 73 HFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDE-------HGFVAREFHRRYRLPP 125 ++ + + V + EE+ ++ VG ++ + +H E E G +F + LP Sbjct: 53 NYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKADFQLSFSLP- 111 Query: 126 GVDPAAVTSALSPEGVLSIQAAPASAQAPPP 156 + A V +A +G+L ++ ++ P Sbjct: 112 --EHAKVNNAKLEQGLLLVEIYQEIPESEKP 140 >3W1Z-A nrPDB Length = 143 Score = 32.4 bits (72), Expect = 0.086, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 10/106 (9%) Query: 56 RAPSVALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHA------RHEERPDE 109 + P P V SV +++ E++ V + + ++E Sbjct: 30 QIPGELSPSIDVHEGKDTVSVDVELPGVKKEDVQVHYDSGKLTISGEVVNERKNESTEGN 89 Query: 110 HGFVAR---EFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQ 152 + R F R +P +D + + S G+L++ Sbjct: 90 QRWSERRFGSFSRTITIPAKIDADRIEANFS-NGLLTVTLPKVEKS 134 >4PIQ-A nrPDB Length = 204 Score = 30.5 bits (67), Expect = 0.36, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%) Query: 108 DEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAA 158 D GF R + Y ALSP+ LS++ + + Q P AA Sbjct: 71 DPFGFSDRRLKQIYSFEYEAMLRRSALALSPDRCLSLEQSTQTVQGPDSAA 121 >2BA1-H nrPDB Length = 259 Score = 29.3 bits (64), Expect = 0.87, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 85 PEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGVLSI 144 PE+I V + ++V R ER D GF EF + +P ++ A ++ + + Sbjct: 2 PEDILVDIKRDYVLSKLRDNERIDGRGF--DEFRKVEIIPNVIEKAEGSALVKLGDTQVV 59 Query: 145 QAAPASAQAPPP 156 P P Sbjct: 60 VGVKMQPGEPYP 71 >3MSU-A nrPDB Length = 427 Score = 28.9 bits (63), Expect = 1.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 18/32 (56%) Query: 74 FSVLLDVKHFSPEEIAVKVVGEHVEVHARHEE 105 + + D + + P+E+ +K + +HA HE+ Sbjct: 205 YMMFADDESYKPDELHIKAMDTIFMLHADHEQ 236 >3QFW-A nrPDB Length = 378 Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 6/111 (5%) Query: 12 LRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVA-LPVAQVPTD 70 +R A + PG+L + FG ++ ++ AL L +YL A + +A + T Sbjct: 67 VRIGLAAATAPAEPGQLLNMLFGNSSIQPDI-ALADVELPAHYLTAFGGPRVGLAGIRTL 125 Query: 71 PGHFSVLLDVKHFSPEEI---AVKVVGEHVEVHARHEERPDEHGFVAREFH 118 G S L P+ + A+ + + + + D+HG + F Sbjct: 126 TGAQSRALTASALKPQGLSPAALASIAHQLALGGVDLIK-DDHGLADQAFS 175 >4B2G-A nrPDB Length = 609 Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 12/98 (12%) Query: 30 DQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVPTDPGHFSVLLDVKHF---SPE 86 + FG L + T+ P + + +P L+D+ H Sbjct: 340 ECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEY 399 Query: 87 EIAVKV--------VGEHVEVHARHEERPDEHGFVARE 116 E+ + VG+ + V H P H FV R+ Sbjct: 400 ELVITTYAGLYRYRVGDILRVTGFHNSAPQFH-FVRRK 436 >2R3S-A nrPDB Length = 335 Score = 27.8 bits (60), Expect = 2.1, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 6 PVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLE 39 P P W++ A A P ++ P +L Q E +E Sbjct: 132 PEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIE 165 >6CGV-M nrPDB Length = 585 Score = 27.0 bits (58), Expect = 3.6, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 29/142 (20%) Query: 20 PGLSAPGRLFDQRFGEGLLEAELAA---LCPTTLAPYYLRAPSVALPVAQVPTDPGHFSV 76 PG+ A R F R + L A L P++L P +VP F Sbjct: 353 PGMYASNRPFINRLMDYLHRAAAVNPEYFTNAILNPHWLPPPGFYTGGFEVPEGNDGFLW 412 Query: 77 -LLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSA 135 +D FSP+ +E+ R E F R L Sbjct: 413 DDIDDSVFSPQPQT------LLELQQR---EQAEAALRKESFRRPSSLSD---------- 453 Query: 136 LSPEGVLSIQAAPASAQAPPPA 157 L A + A +P P+ Sbjct: 454 ------LGAAAPRSDASSPFPS 469 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.305 0.131 0.358 Lambda K H 0.267 0.0387 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,193,847 Number of Sequences: 36641 Number of extensions: 223099 Number of successful extensions: 729 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 690 Number of HSP's gapped (non-prelim): 43 length of query: 160 length of database: 10,336,785 effective HSP length: 89 effective length of query: 71 effective length of database: 7,075,736 effective search space: 502377256 effective search space used: 502377256 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 55 (25.9 bits)