BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= O14417
         (203 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4AEZ-B nrPDB                                                          415   e-117
2V64-D nrPDB                                                          196   6e-51
1DUJ-A nrPDB                                                          191   2e-49
4FJO-C nrPDB                                                           53   1e-07
1WK8-A nrPDB                                                           32   0.19 
1ILE-A nrPDB                                                           31   0.37 
5ZI9-A nrPDB                                                           28   2.8  
4DIN-B nrPDB                                                           28   3.3  
2DXC-C nrPDB                                                           27   6.5  
3R7T-A nrPDB                                                           27   7.7  

>4AEZ-B nrPDB
          Length = 203

 Score =  415 bits (1066), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/203 (99%), Positives = 201/203 (99%)

Query: 1   MSSVPIRTNFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60
           MSSVPIRTNFS KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV
Sbjct: 1   MSSVPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60

Query: 61  KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120
           KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED
Sbjct: 61  KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120

Query: 121 ELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
           ELRVQKEIQALI QITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ
Sbjct: 121 ELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180

Query: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
           VQLRSFSTSMHKIDCQVAYRVNP
Sbjct: 181 VQLRSFSTSMHKIDCQVAYRVNP 203


>2V64-D nrPDB
          Length = 207

 Score =  196 bits (498), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 141/194 (72%), Gaps = 9/194 (4%)

Query: 9   NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
             +L+GS+++V+EFF + +NSIL+QRGIYP+E F  V+KYGL +LV+ D E+  Y+  +V
Sbjct: 18  GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 77

Query: 69  SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELR-VQKE 127
            QL  W++   +QKL++VI++  SGE LERWQF++E         + G+ E   + +Q E
Sbjct: 78  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIEC--------DKGSGEKSQKAIQDE 129

Query: 128 IQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFS 187
           I+++IRQITATVTFLP LE  C+F++L+Y DKD  VP  W +S P+ + ++E+V+LRSF+
Sbjct: 130 IRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFT 189

Query: 188 TSMHKIDCQVAYRV 201
           T++HK++  VAY++
Sbjct: 190 TTIHKVNSMVAYKI 203


>1DUJ-A nrPDB
          Length = 187

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/186 (47%), Positives = 138/186 (74%), Gaps = 1/186 (0%)

Query: 9   NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
           + +L+GS+++V+EFF + +NSIL+QRGIYP+E F  V+KYGL +LV+ D E+  Y+  +V
Sbjct: 2   SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 61

Query: 69  SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128
            QL  W++   +QKL++VI++  SGE LERWQF++E   TA    +   ++ +  +Q EI
Sbjct: 62  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKD-DSAPREKSQKAIQDEI 120

Query: 129 QALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188
           +++IRQITATVTFLP LE  C+F++L+Y DKD  VP  W +S P+ + ++E+V+LRSF+T
Sbjct: 121 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 180

Query: 189 SMHKID 194
           ++HK++
Sbjct: 181 TIHKVN 186


>4FJO-C nrPDB
          Length = 210

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 16  SKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWM 75
           + ++SEF E AV+ IL+ R +YP   F+  +KY + + +S   E+  YI+  +  +   +
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 76  FAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIRQI 135
               ++K+++VI  K     +E++ F +    T     +I +      V++ + A I +I
Sbjct: 76  EKNDVEKVVVVILDK-EHRPVEKFVFEI----TQPPLLSINSDSLLSHVEQLLAAFILKI 130

Query: 136 TATVTFLPQLEEQCTFNVLVYA 157
           +     L      CTF VLV+ 
Sbjct: 131 SVCDAVLDHNPPGCTFTVLVHT 152


>1WK8-A nrPDB
          Length = 194

 Score = 32.0 bits (71), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 28  NSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLIL 85
             I+ Q   + AED +  R YGL +L +VDEE      K++ +  K ++ ++  + IL
Sbjct: 121 TGIVHQAPAFGAEDLETARVYGLPLLKTVDEE-----GKLLVEPFKGLYFREANRAIL 173


>1ILE-A nrPDB
          Length = 821

 Score = 30.8 bits (68), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 30  ILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYI 64
           I+ Q   + AED +  R YGL +L +VDEE K  +
Sbjct: 317 IVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLV 351


>5ZI9-A nrPDB
          Length = 260

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 116 GNKEDELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDP-RI 174
           GN E + R  +E     +++   +    Q++E  T   L+    D   PTDWV +DP R+
Sbjct: 4   GNPEGKKRPPEE-----QRLGPVLRRRGQVQESTTDQRLL----DERAPTDWVHTDPWRV 54

Query: 175 LR 176
           LR
Sbjct: 55  LR 56


>4DIN-B nrPDB
          Length = 381

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 46  RKYGLNMLVSVDEEVKTYIRKIVSQLHKWM--FAKKIQKLIL 85
           R+ G++  V  +E+  +Y+RK++ + +K M   AK I K +L
Sbjct: 96  RRGGVSAEVYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVL 137


>2DXC-C nrPDB
          Length = 243

 Score = 26.9 bits (58), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 21 EFFEYAVNSILFQRGIYPAEDFKVVRKY 48
          E  E AV  +  ++G++ AED +V + Y
Sbjct: 28 EILEMAVRELAIEKGLFSAEDHRVWKDY 55


>3R7T-A nrPDB
          Length = 419

 Score = 26.6 bits (57), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 109 ADQFQNIGNKEDEL-RVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYAD--KDSEVPT 165
           AD+    G++  EL   Q+  +ALI+   A  TF   LE +      + AD  + +E+ T
Sbjct: 138 ADKINRTGHRVGELLEPQRLCEALIKDFEANKTFFEMLEIEIPSAEELLADLKRFNEILT 197

Query: 166 DWVDSDPRILRDA----EQVQLRSFSTSMHKID 194
            ++    R+L  A    ++V L     SM  ID
Sbjct: 198 PYITDTTRMLWKALDEDKRVLLEGAQGSMLDID 230


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4AEZ-B nrPDB                                                          316   3e-87
2V64-D nrPDB                                                          277   2e-75
1DUJ-A nrPDB                                                          274   2e-74
4FJO-C nrPDB                                                          179   9e-46

Sequences not found previously or not previously below threshold:

6HTS-H nrPDB                                                           36   0.013
5AH5-A nrPDB                                                           33   0.078
3N0V-A nrPDB                                                           32   0.27 
1MQS-A nrPDB                                                           31   0.31 
2CE7-A nrPDB                                                           30   0.53 
1WK8-A nrPDB                                                           29   1.9  
1ILE-A nrPDB                                                           29   1.9  
4BHX-A nrPDB                                                           27   4.2  
1V77-A nrPDB                                                           27   5.3  
2JJM-A nrPDB                                                           26   9.8  


CONVERGED!
>4AEZ-B nrPDB
          Length = 203

 Score =  316 bits (810), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 201/203 (99%), Positives = 201/203 (99%)

Query: 1   MSSVPIRTNFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60
           MSSVPIRTNFS KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV
Sbjct: 1   MSSVPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60

Query: 61  KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120
           KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED
Sbjct: 61  KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120

Query: 121 ELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
           ELRVQKEIQALI QITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ
Sbjct: 121 ELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180

Query: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
           VQLRSFSTSMHKIDCQVAYRVNP
Sbjct: 181 VQLRSFSTSMHKIDCQVAYRVNP 203


>2V64-D nrPDB
          Length = 207

 Score =  277 bits (708), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/193 (46%), Positives = 140/193 (72%), Gaps = 7/193 (3%)

Query: 9   NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
             +L+GS+++V+EFF + +NSIL+QRGIYP+E F  V+KYGL +LV+ D E+  Y+  +V
Sbjct: 18  GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 77

Query: 69  SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128
            QL  W++   +QKL++VI++  SGE LERWQF++E    +        ++ +  +Q EI
Sbjct: 78  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKGS-------GEKSQKAIQDEI 130

Query: 129 QALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188
           +++IRQITATVTFLP LE  C+F++L+Y DKD  VP  W +S P+ + ++E+V+LRSF+T
Sbjct: 131 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 190

Query: 189 SMHKIDCQVAYRV 201
           ++HK++  VAY++
Sbjct: 191 TIHKVNSMVAYKI 203


>1DUJ-A nrPDB
          Length = 187

 Score =  274 bits (701), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 138/187 (73%), Gaps = 1/187 (0%)

Query: 9   NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
           + +L+GS+++V+EFF + +NSIL+QRGIYP+E F  V+KYGL +LV+ D E+  Y+  +V
Sbjct: 2   SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 61

Query: 69  SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128
            QL  W++   +QKL++VI++  SGE LERWQF++E   TA    +   ++ +  +Q EI
Sbjct: 62  EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKD-DSAPREKSQKAIQDEI 120

Query: 129 QALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188
           +++IRQITATVTFLP LE  C+F++L+Y DKD  VP  W +S P+ + ++E+V+LRSF+T
Sbjct: 121 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 180

Query: 189 SMHKIDC 195
           ++HK++ 
Sbjct: 181 TIHKVNS 187


>4FJO-C nrPDB
          Length = 210

 Score =  179 bits (453), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 16  SKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWM 75
           + ++SEF E AV+ IL+ R +YP   F+  +KY + + +S   E+  YI+  +  +   +
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 76  FAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIRQI 135
               ++K+++VI  K     +E++ F +    T     +I +      V++ + A I +I
Sbjct: 76  EKNDVEKVVVVILDK-EHRPVEKFVFEI----TQPPLLSINSDSLLSHVEQLLAAFILKI 130

Query: 136 TATVTFLPQLEEQCTFNVLVYA 157
           +     L      CTF VLV+ 
Sbjct: 131 SVCDAVLDHNPPGCTFTVLVHT 152


>6HTS-H nrPDB
          Length = 607

 Score = 35.8 bits (81), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 27  VNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKI---VSQLHKWMFAKKIQKL 83
           ++ +L+ + +          K  + + +   EE+++YI+K+   V Q  + +   ++   
Sbjct: 324 LDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSYIQKLSIAVEQAKQKILQAEVNLE 383

Query: 84  ILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKE 119
           + V+ SK    DLE+ + ++E V++ + F  + ++E
Sbjct: 384 VDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEE 419


>5AH5-A nrPDB
          Length = 822

 Score = 33.1 bits (74), Expect = 0.078,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 63  YIRKIVSQLHKWMFAKKIQKLILVITSKCSGED-LERW-QFNVEMVDTADQFQNIGNKED 120
           YI  I       ++++ I K++  +      E  +E + Q  V  V    Q +++GN  D
Sbjct: 523 YIGGIEHATLHLIYSRFITKVLHDLGYIEFDEPFVELYNQGMVNDVHGRKQSKSLGNVTD 582

Query: 121 ELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
              V +E  A              L  + T+N           P +W DS P+ +R   +
Sbjct: 583 PSVVVQEFGA--------DAVRCYLLFKTTYN----------APINWEDSGPQAMRSYLE 624

Query: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
              R F+ ++ ++    A  + P
Sbjct: 625 RVCRLFTNNLDRLRSSSAIEICP 647


>3N0V-A nrPDB
          Length = 286

 Score = 31.6 bits (70), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 37  YPAEDFKVVRKYGLNMLVSV---DEEVKTYIRKIVSQLHKWMFAKKIQKL----ILVITS 89
           + A   +    +G+   ++      +V   + K    L+  ++ ++I +L    + V+++
Sbjct: 67  FRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSN 126

Query: 90  KCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQA 130
               E L  W          D     G +   L+V +E  A
Sbjct: 127 HPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGA 167


>1MQS-A nrPDB
          Length = 671

 Score = 31.2 bits (69), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 37  YPAEDFKVVRKYGLNMLVSVDEEVKT---YIRKIVSQLHKWMFAKKI----QKLILVITS 89
           Y  E  ++ RK G+  +  +D         I+++V +L +    K        +   + S
Sbjct: 355 YKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLS 414

Query: 90  KCSGEDLERWQFNVEMV----DTADQFQNIGNKEDELRVQKEIQALIRQITATVTFLPQL 145
           +   + L+ + F VE       T  +F +I        ++ ++++ I     + T LP+ 
Sbjct: 415 QLESKSLDTF-FEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKD 473

Query: 146 EEQCTFNVLVYADKDS 161
             Q   N     D D 
Sbjct: 474 FVQNVENYFKENDYDI 489


>2CE7-A nrPDB
          Length = 476

 Score = 30.4 bits (67), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 33  QRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWM--FAKKIQKLILVITSK 90
           ++ ++  ++   +R Y   +   +DEEVK  +     +  + +  + K++  ++ ++  K
Sbjct: 385 EQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEK 444

Query: 91  C--SGEDLER 98
               G++L R
Sbjct: 445 ETIEGDELRR 454


>1WK8-A nrPDB
          Length = 194

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 30  ILFQRGIYPAEDFKVVRKYGLNMLVSVDEE 59
           I+ Q   + AED +  R YGL +L +VDEE
Sbjct: 123 IVHQAPAFGAEDLETARVYGLPLLKTVDEE 152


>1ILE-A nrPDB
          Length = 821

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 30  ILFQRGIYPAEDFKVVRKYGLNMLVSVDEE 59
           I+ Q   + AED +  R YGL +L +VDEE
Sbjct: 317 IVHQAPAFGAEDLETARVYGLPLLKTVDEE 346


>4BHX-A nrPDB
          Length = 94

 Score = 27.4 bits (59), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 20 SEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNML---VSVDEEVK------TYIRKIVSQ 70
          SEFF     ++++   + P +    +R   L+ L       EE+        Y+  I  +
Sbjct: 6  SEFFHQRFRNLIYVEFVGPRKTLIKLRNLCLDWLQPETRTKEEIIELLVLEQYLTIIPEK 65

Query: 71 LHKWMFAKK---IQKLILVITSKCS 92
          L  W+ AKK    +KL+ ++ +   
Sbjct: 66 LKPWVRAKKPENCEKLVTLLENYKE 90


>1V77-A nrPDB
          Length = 212

 Score = 27.0 bits (58), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 6  IRTNFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIR 65
          I  +   K + +L  E+F+  V SI F   +   +  +  ++YG   ++  + +  + +R
Sbjct: 10 IEMDIRDKEAYELAKEWFDEVVVSIKFNEEVDKEKLREARKEYGKVAILLSNPK-PSLVR 68

Query: 66 KIVSQLHKWMFAKKIQKLILVITSKCSGED 95
            V +   ++   +   L ++  S   G D
Sbjct: 69 DTVQKFKSYLIYVESNDLRVIRYSIEKGVD 98


>2JJM-A nrPDB
          Length = 394

 Score = 26.2 bits (56), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 64  IRKIVSQLHKWMFAKKIQKLILVITSKCS-GEDLERWQFNVEMVDTADQFQNIGNKEDEL 122
           I +    +      K IQ +   I  +     D+ + +    + ++     +I N     
Sbjct: 168 INETHELVKP---NKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVK 224

Query: 123 RVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTD 166
           RVQ  +QA  + +T     L  + +   F  ++   K+  +   
Sbjct: 225 RVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDR 268


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.313    0.131    0.349 

Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,991,947
Number of Sequences: 36641
Number of extensions: 246556
Number of successful extensions: 669
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 34
length of query: 203
length of database: 10,336,785
effective HSP length: 92
effective length of query: 111
effective length of database: 6,965,813
effective search space: 773205243
effective search space used: 773205243
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.6 bits)