BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= O14417
(203 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4AEZ-B nrPDB 415 e-117
2V64-D nrPDB 196 6e-51
1DUJ-A nrPDB 191 2e-49
4FJO-C nrPDB 53 1e-07
1WK8-A nrPDB 32 0.19
1ILE-A nrPDB 31 0.37
5ZI9-A nrPDB 28 2.8
4DIN-B nrPDB 28 3.3
2DXC-C nrPDB 27 6.5
3R7T-A nrPDB 27 7.7
>4AEZ-B nrPDB
Length = 203
Score = 415 bits (1066), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/203 (99%), Positives = 201/203 (99%)
Query: 1 MSSVPIRTNFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60
MSSVPIRTNFS KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV
Sbjct: 1 MSSVPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60
Query: 61 KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120
KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED
Sbjct: 61 KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120
Query: 121 ELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
ELRVQKEIQALI QITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ
Sbjct: 121 ELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
Query: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
VQLRSFSTSMHKIDCQVAYRVNP
Sbjct: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
>2V64-D nrPDB
Length = 207
Score = 196 bits (498), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 141/194 (72%), Gaps = 9/194 (4%)
Query: 9 NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
+L+GS+++V+EFF + +NSIL+QRGIYP+E F V+KYGL +LV+ D E+ Y+ +V
Sbjct: 18 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 77
Query: 69 SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELR-VQKE 127
QL W++ +QKL++VI++ SGE LERWQF++E + G+ E + +Q E
Sbjct: 78 EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIEC--------DKGSGEKSQKAIQDE 129
Query: 128 IQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFS 187
I+++IRQITATVTFLP LE C+F++L+Y DKD VP W +S P+ + ++E+V+LRSF+
Sbjct: 130 IRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFT 189
Query: 188 TSMHKIDCQVAYRV 201
T++HK++ VAY++
Sbjct: 190 TTIHKVNSMVAYKI 203
>1DUJ-A nrPDB
Length = 187
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 138/186 (74%), Gaps = 1/186 (0%)
Query: 9 NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
+ +L+GS+++V+EFF + +NSIL+QRGIYP+E F V+KYGL +LV+ D E+ Y+ +V
Sbjct: 2 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 61
Query: 69 SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128
QL W++ +QKL++VI++ SGE LERWQF++E TA + ++ + +Q EI
Sbjct: 62 EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKD-DSAPREKSQKAIQDEI 120
Query: 129 QALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188
+++IRQITATVTFLP LE C+F++L+Y DKD VP W +S P+ + ++E+V+LRSF+T
Sbjct: 121 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 180
Query: 189 SMHKID 194
++HK++
Sbjct: 181 TIHKVN 186
>4FJO-C nrPDB
Length = 210
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 16 SKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWM 75
+ ++SEF E AV+ IL+ R +YP F+ +KY + + +S E+ YI+ + + +
Sbjct: 16 ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75
Query: 76 FAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIRQI 135
++K+++VI K +E++ F + T +I + V++ + A I +I
Sbjct: 76 EKNDVEKVVVVILDK-EHRPVEKFVFEI----TQPPLLSINSDSLLSHVEQLLAAFILKI 130
Query: 136 TATVTFLPQLEEQCTFNVLVYA 157
+ L CTF VLV+
Sbjct: 131 SVCDAVLDHNPPGCTFTVLVHT 152
>1WK8-A nrPDB
Length = 194
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 28 NSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLIL 85
I+ Q + AED + R YGL +L +VDEE K++ + K ++ ++ + IL
Sbjct: 121 TGIVHQAPAFGAEDLETARVYGLPLLKTVDEE-----GKLLVEPFKGLYFREANRAIL 173
>1ILE-A nrPDB
Length = 821
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 30 ILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYI 64
I+ Q + AED + R YGL +L +VDEE K +
Sbjct: 317 IVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLV 351
>5ZI9-A nrPDB
Length = 260
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 116 GNKEDELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDP-RI 174
GN E + R +E +++ + Q++E T L+ D PTDWV +DP R+
Sbjct: 4 GNPEGKKRPPEE-----QRLGPVLRRRGQVQESTTDQRLL----DERAPTDWVHTDPWRV 54
Query: 175 LR 176
LR
Sbjct: 55 LR 56
>4DIN-B nrPDB
Length = 381
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 46 RKYGLNMLVSVDEEVKTYIRKIVSQLHKWM--FAKKIQKLIL 85
R+ G++ V +E+ +Y+RK++ + +K M AK I K +L
Sbjct: 96 RRGGVSAEVYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVL 137
>2DXC-C nrPDB
Length = 243
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 21 EFFEYAVNSILFQRGIYPAEDFKVVRKY 48
E E AV + ++G++ AED +V + Y
Sbjct: 28 EILEMAVRELAIEKGLFSAEDHRVWKDY 55
>3R7T-A nrPDB
Length = 419
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 109 ADQFQNIGNKEDEL-RVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYAD--KDSEVPT 165
AD+ G++ EL Q+ +ALI+ A TF LE + + AD + +E+ T
Sbjct: 138 ADKINRTGHRVGELLEPQRLCEALIKDFEANKTFFEMLEIEIPSAEELLADLKRFNEILT 197
Query: 166 DWVDSDPRILRDA----EQVQLRSFSTSMHKID 194
++ R+L A ++V L SM ID
Sbjct: 198 PYITDTTRMLWKALDEDKRVLLEGAQGSMLDID 230
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4AEZ-B nrPDB 316 3e-87
2V64-D nrPDB 277 2e-75
1DUJ-A nrPDB 274 2e-74
4FJO-C nrPDB 179 9e-46
Sequences not found previously or not previously below threshold:
6HTS-H nrPDB 36 0.013
5AH5-A nrPDB 33 0.078
3N0V-A nrPDB 32 0.27
1MQS-A nrPDB 31 0.31
2CE7-A nrPDB 30 0.53
1WK8-A nrPDB 29 1.9
1ILE-A nrPDB 29 1.9
4BHX-A nrPDB 27 4.2
1V77-A nrPDB 27 5.3
2JJM-A nrPDB 26 9.8
CONVERGED!
>4AEZ-B nrPDB
Length = 203
Score = 316 bits (810), Expect = 3e-87, Method: Composition-based stats.
Identities = 201/203 (99%), Positives = 201/203 (99%)
Query: 1 MSSVPIRTNFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60
MSSVPIRTNFS KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV
Sbjct: 1 MSSVPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60
Query: 61 KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120
KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED
Sbjct: 61 KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKED 120
Query: 121 ELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
ELRVQKEIQALI QITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ
Sbjct: 121 ELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
Query: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
VQLRSFSTSMHKIDCQVAYRVNP
Sbjct: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
>2V64-D nrPDB
Length = 207
Score = 277 bits (708), Expect = 2e-75, Method: Composition-based stats.
Identities = 89/193 (46%), Positives = 140/193 (72%), Gaps = 7/193 (3%)
Query: 9 NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
+L+GS+++V+EFF + +NSIL+QRGIYP+E F V+KYGL +LV+ D E+ Y+ +V
Sbjct: 18 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 77
Query: 69 SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128
QL W++ +QKL++VI++ SGE LERWQF++E + ++ + +Q EI
Sbjct: 78 EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKGS-------GEKSQKAIQDEI 130
Query: 129 QALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188
+++IRQITATVTFLP LE C+F++L+Y DKD VP W +S P+ + ++E+V+LRSF+T
Sbjct: 131 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 190
Query: 189 SMHKIDCQVAYRV 201
++HK++ VAY++
Sbjct: 191 TIHKVNSMVAYKI 203
>1DUJ-A nrPDB
Length = 187
Score = 274 bits (701), Expect = 2e-74, Method: Composition-based stats.
Identities = 88/187 (47%), Positives = 138/187 (73%), Gaps = 1/187 (0%)
Query: 9 NFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68
+ +L+GS+++V+EFF + +NSIL+QRGIYP+E F V+KYGL +LV+ D E+ Y+ +V
Sbjct: 2 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 61
Query: 69 SQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEI 128
QL W++ +QKL++VI++ SGE LERWQF++E TA + ++ + +Q EI
Sbjct: 62 EQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKD-DSAPREKSQKAIQDEI 120
Query: 129 QALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFST 188
+++IRQITATVTFLP LE C+F++L+Y DKD VP W +S P+ + ++E+V+LRSF+T
Sbjct: 121 RSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTT 180
Query: 189 SMHKIDC 195
++HK++
Sbjct: 181 TIHKVNS 187
>4FJO-C nrPDB
Length = 210
Score = 179 bits (453), Expect = 9e-46, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 16 SKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWM 75
+ ++SEF E AV+ IL+ R +YP F+ +KY + + +S E+ YI+ + + +
Sbjct: 16 ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75
Query: 76 FAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIRQI 135
++K+++VI K +E++ F + T +I + V++ + A I +I
Sbjct: 76 EKNDVEKVVVVILDK-EHRPVEKFVFEI----TQPPLLSINSDSLLSHVEQLLAAFILKI 130
Query: 136 TATVTFLPQLEEQCTFNVLVYA 157
+ L CTF VLV+
Sbjct: 131 SVCDAVLDHNPPGCTFTVLVHT 152
>6HTS-H nrPDB
Length = 607
Score = 35.8 bits (81), Expect = 0.013, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 27 VNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKI---VSQLHKWMFAKKIQKL 83
++ +L+ + + K + + + EE+++YI+K+ V Q + + ++
Sbjct: 324 LDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSYIQKLSIAVEQAKQKILQAEVNLE 383
Query: 84 ILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKE 119
+ V+ SK DLE+ + ++E V++ + F + ++E
Sbjct: 384 VDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEE 419
>5AH5-A nrPDB
Length = 822
Score = 33.1 bits (74), Expect = 0.078, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 20/143 (13%)
Query: 63 YIRKIVSQLHKWMFAKKIQKLILVITSKCSGED-LERW-QFNVEMVDTADQFQNIGNKED 120
YI I ++++ I K++ + E +E + Q V V Q +++GN D
Sbjct: 523 YIGGIEHATLHLIYSRFITKVLHDLGYIEFDEPFVELYNQGMVNDVHGRKQSKSLGNVTD 582
Query: 121 ELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQ 180
V +E A L + T+N P +W DS P+ +R +
Sbjct: 583 PSVVVQEFGA--------DAVRCYLLFKTTYN----------APINWEDSGPQAMRSYLE 624
Query: 181 VQLRSFSTSMHKIDCQVAYRVNP 203
R F+ ++ ++ A + P
Sbjct: 625 RVCRLFTNNLDRLRSSSAIEICP 647
>3N0V-A nrPDB
Length = 286
Score = 31.6 bits (70), Expect = 0.27, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 37 YPAEDFKVVRKYGLNMLVSV---DEEVKTYIRKIVSQLHKWMFAKKIQKL----ILVITS 89
+ A + +G+ ++ +V + K L+ ++ ++I +L + V+++
Sbjct: 67 FRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSN 126
Query: 90 KCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQA 130
E L W D G + L+V +E A
Sbjct: 127 HPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGA 167
>1MQS-A nrPDB
Length = 671
Score = 31.2 bits (69), Expect = 0.31, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 37 YPAEDFKVVRKYGLNMLVSVDEEVKT---YIRKIVSQLHKWMFAKKI----QKLILVITS 89
Y E ++ RK G+ + +D I+++V +L + K + + S
Sbjct: 355 YKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLS 414
Query: 90 KCSGEDLERWQFNVEMV----DTADQFQNIGNKEDELRVQKEIQALIRQITATVTFLPQL 145
+ + L+ + F VE T +F +I ++ ++++ I + T LP+
Sbjct: 415 QLESKSLDTF-FEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKD 473
Query: 146 EEQCTFNVLVYADKDS 161
Q N D D
Sbjct: 474 FVQNVENYFKENDYDI 489
>2CE7-A nrPDB
Length = 476
Score = 30.4 bits (67), Expect = 0.53, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 33 QRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWM--FAKKIQKLILVITSK 90
++ ++ ++ +R Y + +DEEVK + + + + + K++ ++ ++ K
Sbjct: 385 EQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEK 444
Query: 91 C--SGEDLER 98
G++L R
Sbjct: 445 ETIEGDELRR 454
>1WK8-A nrPDB
Length = 194
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 30 ILFQRGIYPAEDFKVVRKYGLNMLVSVDEE 59
I+ Q + AED + R YGL +L +VDEE
Sbjct: 123 IVHQAPAFGAEDLETARVYGLPLLKTVDEE 152
>1ILE-A nrPDB
Length = 821
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 30 ILFQRGIYPAEDFKVVRKYGLNMLVSVDEE 59
I+ Q + AED + R YGL +L +VDEE
Sbjct: 317 IVHQAPAFGAEDLETARVYGLPLLKTVDEE 346
>4BHX-A nrPDB
Length = 94
Score = 27.4 bits (59), Expect = 4.2, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 20 SEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNML---VSVDEEVK------TYIRKIVSQ 70
SEFF ++++ + P + +R L+ L EE+ Y+ I +
Sbjct: 6 SEFFHQRFRNLIYVEFVGPRKTLIKLRNLCLDWLQPETRTKEEIIELLVLEQYLTIIPEK 65
Query: 71 LHKWMFAKK---IQKLILVITSKCS 92
L W+ AKK +KL+ ++ +
Sbjct: 66 LKPWVRAKKPENCEKLVTLLENYKE 90
>1V77-A nrPDB
Length = 212
Score = 27.0 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 6 IRTNFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIR 65
I + K + +L E+F+ V SI F + + + ++YG ++ + + + +R
Sbjct: 10 IEMDIRDKEAYELAKEWFDEVVVSIKFNEEVDKEKLREARKEYGKVAILLSNPK-PSLVR 68
Query: 66 KIVSQLHKWMFAKKIQKLILVITSKCSGED 95
V + ++ + L ++ S G D
Sbjct: 69 DTVQKFKSYLIYVESNDLRVIRYSIEKGVD 98
>2JJM-A nrPDB
Length = 394
Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 64 IRKIVSQLHKWMFAKKIQKLILVITSKCS-GEDLERWQFNVEMVDTADQFQNIGNKEDEL 122
I + + K IQ + I + D+ + + + ++ +I N
Sbjct: 168 INETHELVKP---NKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVK 224
Query: 123 RVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTD 166
RVQ +QA + +T L + + F ++ K+ +
Sbjct: 225 RVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDR 268
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.313 0.131 0.349
Lambda K H
0.267 0.0405 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,991,947
Number of Sequences: 36641
Number of extensions: 246556
Number of successful extensions: 669
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 34
length of query: 203
length of database: 10,336,785
effective HSP length: 92
effective length of query: 111
effective length of database: 6,965,813
effective search space: 773205243
effective search space used: 773205243
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.6 bits)