BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= O09106
(482 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4BKX-B nrPDB 1004 0.0
5ICN-B nrPDB 797 0.0
6G3O-A nrPDB 724 0.0
4A69-A nrPDB 544 e-155
5D1C-A nrPDB 322 3e-88
1C3R-A nrPDB 172 2e-43
5EDU-B nrPDB 106 2e-23
5IKK-A nrPDB 101 6e-22
5TD7-A nrPDB 99 4e-21
3MEN-A nrPDB 91 8e-19
4ZUN-A nrPDB 73 2e-13
3DUF-I nrPDB 31 0.92
1REP-C nrPDB 31 1.1
6MZD-C nrPDB 28 7.4
>4BKX-B nrPDB
Length = 482
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/482 (99%), Positives = 482/482 (100%)
Query: 1 MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
MAQTQGT+RKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
Sbjct: 1 MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
Query: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
Sbjct: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
Query: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
Sbjct: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
Query: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
Sbjct: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
Query: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
Sbjct: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
Query: 361 KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKRISICSSDKRIACEEEF 420
KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDE+DPDKRISICSSDKRIACEEEF
Sbjct: 361 KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKRISICSSDKRIACEEEF 420
Query: 421 SDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK 480
SDS+EEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK
Sbjct: 421 SDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK 480
Query: 481 LA 482
LA
Sbjct: 481 LA 482
>5ICN-B nrPDB
Length = 376
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/376 (99%), Positives = 376/376 (100%)
Query: 1 MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
MAQTQGT+RKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
Sbjct: 1 MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
Query: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
Sbjct: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
Query: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
Sbjct: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
Query: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
Sbjct: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
Query: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
Sbjct: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
Query: 361 KIKQRLFENLRMLPHA 376
KIKQRLFENLRMLPHA
Sbjct: 361 KIKQRLFENLRMLPHA 376
>6G3O-A nrPDB
Length = 370
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/370 (93%), Positives = 362/370 (97%)
Query: 6 GTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMT 65
G K+KVCYYYDGD+GNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA AEEMT
Sbjct: 1 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMT 60
Query: 66 KYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLN 125
KYHSD+YIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA AVKLN
Sbjct: 61 KYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLN 120
Query: 126 KQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE 185
+QQTD+AVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE
Sbjct: 121 RQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE 180
Query: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVN+P+RDGIDDESY IFKP++
Sbjct: 181 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 240
Query: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTI 305
SKVMEM+QPSAVVLQCG+DSLSGDRLGCFNLT+KGHAKCVE VK+FNLP+LMLGGGGYTI
Sbjct: 241 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTI 300
Query: 306 RNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQR 365
RNVARCWTYETAVALD EIPNELPYNDYFEYFGPDFKLHISPSNMTNQNT EY+EKIKQR
Sbjct: 301 RNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQR 360
Query: 366 LFENLRMLPH 375
LFENLRMLPH
Sbjct: 361 LFENLRMLPH 370
>4A69-A nrPDB
Length = 376
Score = 544 bits (1401), Expect = e-155, Method: Compositional matrix adjust.
Identities = 239/374 (63%), Positives = 311/374 (83%), Gaps = 2/374 (0%)
Query: 9 RKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYH 68
+ V Y+YD DVGN++YG GHPMKPHR+ +TH+L+L+YGLY+KM +++P++A+ +M ++H
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 69 SDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQ 128
S+DYI FL+ + P NM ++K + FNVG+DCPVF GLFEFC TG S+ A +LN +
Sbjct: 63 SEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKI 122
Query: 129 TDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFY 188
DIA+NWAGGLHHAKK EASGFCYVNDIV+ ILELLKYH RVLYIDIDIHHGDGV+EAFY
Sbjct: 123 CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFY 182
Query: 189 TTDRVMTVSFHKYGEY-FPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSK 247
TDRVMTVSFHKYG Y FPGTGD+ ++GA G+YY +N PLRDGIDD+SY+ +F+PV+++
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQ 242
Query: 248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRN 307
V++ +QP+ +VLQCG+DSL DRLGCFNL+I+GH +CVE+VKSFN+P+L+LGGGGYT+RN
Sbjct: 243 VVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRN 302
Query: 308 VARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSN-MTNQNTNEYLEKIKQRL 366
VARCWTYET++ ++ I ELPY++YFEYF PDF LH S + NQN+ +YL++I+Q +
Sbjct: 303 VARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTI 362
Query: 367 FENLRMLPHAPGVQ 380
FENL+ML HAP VQ
Sbjct: 363 FENLKMLNHAPSVQ 376
>5D1C-A nrPDB
Length = 389
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 226/341 (66%), Gaps = 2/341 (0%)
Query: 32 PHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQM 91
P R M H+L+ Y L+++M I +P A+ EEM +H+D Y++ L+ + + ++ +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 92 QRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFC 151
+ + +G DCP +G+F++ G ++ +A L +A+NW+GG HHAKK EASGFC
Sbjct: 95 E-YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 152 YVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGD 210
Y+ND VL IL L + +R+LY+D+D+HHGDGVE+AF T +VMTVS HK+ +FPGTGD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 211 LRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDR 270
+ D+G GKG+YY+VN P++ GI DE Y I + V+ +V + F P AVVLQ G+D+++GD
Sbjct: 214 VSDVGLGKGRYYSVNVPIQGGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDP 273
Query: 271 LGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPY 330
+ FN+T G KC++++ + L L+LGGGG+ + N ARCWTY T V L + +E+P
Sbjct: 274 MCSFNMTPVGIGKCLKYILQWQLATLILGGGGFNLANTARCWTYLTGVILGKTLSSEIPD 333
Query: 331 NDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLR 371
+++F +GPD+ L I+PS ++N +++I + NL+
Sbjct: 334 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
>1C3R-A nrPDB
Length = 375
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 173/316 (54%), Gaps = 9/316 (2%)
Query: 18 DVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIK-FL 76
D G Y Y + HP+K R+ + L + E+ + A EE+ +H++DYI +
Sbjct: 11 DYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLM 70
Query: 77 RSIRPDNMSEYSKQMQRFNVGE-DCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNW 135
+ R ++ + +++ ++N+G + PV +F L+TG +V + + K ++A N
Sbjct: 71 EAERSQSVPKGARE--KYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLK--GNVAFNP 126
Query: 136 AGGLHHAKKSEASGFCYVNDIVLAILELLKY-HQRVLYIDIDIHHGDGVEEAFYTTDRVM 194
AGG+HHA KS A+GFCY+N+ + I L K +R+LYID+D HH DGV+EAFY TD+V
Sbjct: 127 AGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVF 186
Query: 195 TVSFHKYGEY-FP-GTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMF 252
+S H+ EY FP G L +IG GKGK Y +N PL G++D + + + V E+F
Sbjct: 187 VLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVF 246
Query: 253 QPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCW 312
+P +LQ G+D L D L FNL+ K V+ + LGGGGY +AR W
Sbjct: 247 EPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAW 306
Query: 313 TYETAVALDTEIPNEL 328
T E+P +L
Sbjct: 307 TLIWCELSGREVPEKL 322
>5EDU-B nrPDB
Length = 745
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 17/308 (5%)
Query: 15 YDGDVGNY--YYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDY 72
YD ++ N+ + HP P RI L GL + P A E+ HS +Y
Sbjct: 395 YDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEY 454
Query: 73 IKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGS--VASAVKLNKQQTD 130
+ LR+ E ++ F+ CP F QL+TG + + AV +
Sbjct: 455 VGHLRATEKMKTRELHRESSNFDSIYICP---STFACAQLATGAACRLVEAVLSGEVLNG 511
Query: 131 IAVNWAGGLHHAKKSEASGFCYVNDIVLAI--LELLKYHQ-RVLYIDIDIHHGDGVEEAF 187
AV G HHA++ A GFC+ N + +A + + H R+L +D D+HHG+G + F
Sbjct: 512 AAVVRPPG-HHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVDWDVHHGNGTQHMF 570
Query: 188 YTTDRVMTVSFHKY--GEYFP--GTGDLRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFK 242
V+ VS H+Y G +FP G IG G + VN + D Y A +
Sbjct: 571 EDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWH 630
Query: 243 PVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSF-NLPMLMLGGG 301
++ + F P V++ G D+ GD LG ++ +G+A + + ++++ G
Sbjct: 631 RLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEG 690
Query: 302 GYTIRNVA 309
GY + +++
Sbjct: 691 GYNLTSIS 698
>5IKK-A nrPDB
Length = 657
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 131/275 (47%), Gaps = 21/275 (7%)
Query: 58 KANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFC-QLSTGG 116
+A EE+ + HS + + R + MS + + D ++ FC +L+ G
Sbjct: 84 EATLEELLQVHSQEM--YDRVTNTEKMSH--EDLANLEKISDSLYYNNESAFCARLACGS 139
Query: 117 SV--ASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH----QRV 170
++ +AV + + AV G HHA+ + GFC N++ + +L+ +RV
Sbjct: 140 AIETCTAVVTGQVKNAFAVVRPPG-HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRV 198
Query: 171 LYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGT--GDLRDIGAGKGKYYAVNY 226
L +D DIHHG+G + AFY V+ VS H+Y G ++PGT G + G G G VN
Sbjct: 199 LIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNI 258
Query: 227 PLR-DGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCV 285
P G+ D Y F+ V+ V F P V++ CG D+ +GD +G F LT +A
Sbjct: 259 PWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMT 318
Query: 286 EFVKSFNLPMLMLG-GGGYTIRNVARCWTYETAVA 319
+ + + + GGY + +++ T AVA
Sbjct: 319 QMLMGLADGKVFISLEGGYNLDSIS---TSALAVA 350
>5TD7-A nrPDB
Length = 678
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 13/247 (5%)
Query: 32 PHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQM 91
P R+ +++ L +GL ++ + +A +E+ HS++Y++ ++ N+ E
Sbjct: 32 PERLTVSYEALRTHGLAQRCKAVPVRQATEQEILLAHSEEYLEAVKQTPGMNVEELMAFS 91
Query: 92 QRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQT--DIAVNWAGGLHHAKKSEASG 149
+++N D ++ +L+ G ++ + K++ +A+ G HH+++S A+G
Sbjct: 92 KKYN---DVYFHQNIYHCAKLAAGATLQLVDSVMKREVRNGMALVRPPG-HHSQRSAANG 147
Query: 150 FCYVNDIVLAILELLKYHQ--RVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYF 205
FC N++ A L K + R+L +D D+HHG G++ F V+ S+H+Y ++
Sbjct: 148 FCVFNNVAFAALYAKKNYNLNRILIVDWDVHHGQGIQYCFEEDPSVLYFSWHRYEHQSFW 207
Query: 206 PGT--GDLRDIGAGKGKYYAVNYPL-RDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCG 262
P D +G GKG + +N P + G+ + Y A F V+ V F P V++ G
Sbjct: 208 PNLPESDYSSVGKGKGSGFNINLPWNKVGMTNSDYLAAFFHVLLPVAYEFDPELVIVSAG 267
Query: 263 SDSLSGD 269
DS GD
Sbjct: 268 FDSAIGD 274
>3MEN-A nrPDB
Length = 362
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 140 HHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFH 199
HHA+ A GFCY+N+ +A L H RV +D D+HHG G++E FY V+ VS H
Sbjct: 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIH 236
Query: 200 -KYGEYFPGTGDLRD-IGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEM--FQPS 255
++P D GAG+G Y VN P+ G S A F+ V + E+ F P
Sbjct: 237 GDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHG---SSEAAFFERVDDALRELRRFAPD 293
Query: 256 AVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNV 308
A+VL G D D +T G + + + LP +++ GGY I ++
Sbjct: 294 ALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESL 346
>4ZUN-A nrPDB
Length = 341
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Query: 140 HHAKKSEASGFCYVNDIVLAILELL-KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
HHA G+C++N+ +A LL K +++ +D+D HHG+G ++ FY V S
Sbjct: 158 HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASL 217
Query: 199 HK-YGEYFPG-TGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSA 256
H E FP G + G G G NYP+ G + + ++ F A
Sbjct: 218 HGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRI-AAFGAEA 276
Query: 257 VVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNV 308
+V+ G D+ D + F LT + + + +P+L++ GGY + +
Sbjct: 277 IVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEI 328
>3DUF-I nrPDB
Length = 428
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 233 DDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKG 280
+D++ I PV KV+E+ P V G ++ D G N+T KG
Sbjct: 41 NDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYENMTFKG 88
>1REP-C nrPDB
Length = 251
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 139 LHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDID-IHHGDGVEEAFYTTDRVMTVS 197
++H K+ + ND+ A L + +R+LY+ +D I DG + D + +
Sbjct: 7 INHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEH---DGICEIH 63
Query: 198 FHKYGEYFPGTG-----DLRD-IGAGKGKYYAVNYPLRDGIDDESYEAI 240
KY E F T D+R + + GK P D D++ YE+
Sbjct: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESF 112
>6MZD-C nrPDB
Length = 929
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 219 GKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDS-----LSGDRL-G 272
GK + N P + + D++ EA V+++ +P GS+S S R+ G
Sbjct: 369 GKLNSENQPKKAVVADKTIEASIDAVIARACAEREPDPFEFSSGSESEGDIFTSPKRISG 428
Query: 273 CFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAV 318
T K F KS + P L L GG + N WT + ++
Sbjct: 429 PECTTPKASTSANNFTKSGSTP-LPLSGGTSSSDN---SWTMDASI 470
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4BKX-B nrPDB 839 0.0
5ICN-B nrPDB 647 0.0
6G3O-A nrPDB 607 e-174
4A69-A nrPDB 575 e-164
5D1C-A nrPDB 475 e-134
5EDU-B nrPDB 364 e-101
1C3R-A nrPDB 350 1e-96
5TD7-A nrPDB 325 3e-89
5IKK-A nrPDB 315 3e-86
4ZUN-A nrPDB 229 2e-60
3MEN-A nrPDB 213 1e-55
Sequences not found previously or not previously below threshold:
3KYC-B nrPDB 32 0.55
6GYL-Q nrPDB 31 1.2
4V1O-Q nrPDB 31 1.2
4MLC-A nrPDB 31 1.4
6GMH-U nrPDB 30 1.6
5O6D-A nrPDB 30 1.7
1WOQ-A nrPDB 30 2.5
1O20-A nrPDB 30 2.7
2PCR-A nrPDB 30 3.1
6FSZ-II nrPDB 30 3.4
2FKJ-A nrPDB 29 3.5
2A42-B nrPDB 29 3.6
5WLC-NA nrPDB 29 4.2
6ID1-U nrPDB 29 4.3
2FKG-A nrPDB 28 5.9
5OQL-H nrPDB 28 6.6
2L08-A nrPDB 28 7.5
2I1J-A nrPDB 28 8.7
CONVERGED!
>4BKX-B nrPDB
Length = 482
Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats.
Identities = 479/482 (99%), Positives = 482/482 (100%)
Query: 1 MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
MAQTQGT+RKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
Sbjct: 1 MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
Query: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
Sbjct: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
Query: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
Sbjct: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
Query: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
Sbjct: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
Query: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
Sbjct: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
Query: 361 KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKRISICSSDKRIACEEEF 420
KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDE+DPDKRISICSSDKRIACEEEF
Sbjct: 361 KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKRISICSSDKRIACEEEF 420
Query: 421 SDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK 480
SDS+EEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK
Sbjct: 421 SDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK 480
Query: 481 LA 482
LA
Sbjct: 481 LA 482
>5ICN-B nrPDB
Length = 376
Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats.
Identities = 375/376 (99%), Positives = 376/376 (100%)
Query: 1 MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
MAQTQGT+RKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
Sbjct: 1 MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS 120
Query: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
Sbjct: 121 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG 180
Query: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
Sbjct: 181 DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI 240
Query: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
Sbjct: 241 FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG 300
Query: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
Sbjct: 301 GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE 360
Query: 361 KIKQRLFENLRMLPHA 376
KIKQRLFENLRMLPHA
Sbjct: 361 KIKQRLFENLRMLPHA 376
>6G3O-A nrPDB
Length = 370
Score = 607 bits (1566), Expect = e-174, Method: Composition-based stats.
Identities = 347/370 (93%), Positives = 362/370 (97%)
Query: 6 GTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMT 65
G K+KVCYYYDGD+GNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA AEEMT
Sbjct: 1 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMT 60
Query: 66 KYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLN 125
KYHSD+YIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA AVKLN
Sbjct: 61 KYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLN 120
Query: 126 KQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE 185
+QQTD+AVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE
Sbjct: 121 RQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE 180
Query: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVN+P+RDGIDDESY IFKP++
Sbjct: 181 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 240
Query: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTI 305
SKVMEM+QPSAVVLQCG+DSLSGDRLGCFNLT+KGHAKCVE VK+FNLP+LMLGGGGYTI
Sbjct: 241 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTI 300
Query: 306 RNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQR 365
RNVARCWTYETAVALD EIPNELPYNDYFEYFGPDFKLHISPSNMTNQNT EY+EKIKQR
Sbjct: 301 RNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQR 360
Query: 366 LFENLRMLPH 375
LFENLRMLPH
Sbjct: 361 LFENLRMLPH 370
>4A69-A nrPDB
Length = 376
Score = 575 bits (1481), Expect = e-164, Method: Composition-based stats.
Identities = 238/374 (63%), Positives = 310/374 (82%), Gaps = 2/374 (0%)
Query: 9 RKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYH 68
+ V Y+YD DVGN++YG GHPMKPHR+ +TH+L+L+YGLY+KM +++P++A+ +M ++H
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 69 SDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQ 128
S+DYI FL+ + P NM ++K + FNVG+DCPVF GLFEFC TG S+ A +LN +
Sbjct: 63 SEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKI 122
Query: 129 TDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFY 188
DIA+NWAGGLHHAKK EASGFCYVNDIV+ ILELLKYH RVLYIDIDIHHGDGV+EAFY
Sbjct: 123 CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFY 182
Query: 189 TTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSK 247
TDRVMTVSFHKYG +FPGTGD+ ++GA G+YY +N PLRDGIDD+SY+ +F+PV+++
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQ 242
Query: 248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRN 307
V++ +QP+ +VLQCG+DSL DRLGCFNL+I+GH +CVE+VKSFN+P+L+LGGGGYT+RN
Sbjct: 243 VVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRN 302
Query: 308 VARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNM-TNQNTNEYLEKIKQRL 366
VARCWTYET++ ++ I ELPY++YFEYF PDF LH S NQN+ +YL++I+Q +
Sbjct: 303 VARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTI 362
Query: 367 FENLRMLPHAPGVQ 380
FENL+ML HAP VQ
Sbjct: 363 FENLKMLNHAPSVQ 376
>5D1C-A nrPDB
Length = 389
Score = 475 bits (1222), Expect = e-134, Method: Composition-based stats.
Identities = 145/341 (42%), Positives = 226/341 (66%), Gaps = 2/341 (0%)
Query: 32 PHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQM 91
P R M H+L+ Y L+++M I +P A+ EEM +H+D Y++ L+ + + ++ +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 92 QRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFC 151
+ + +G DCP +G+F++ G ++ +A L +A+NW+GG HHAKK EASGFC
Sbjct: 95 E-YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 152 YVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGD 210
Y+ND VL IL L + +R+LY+D+D+HHGDGVE+AF T +VMTVS HK+ +FPGTGD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 211 LRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDR 270
+ D+G GKG+YY+VN P++ GI DE Y I + V+ +V + F P AVVLQ G+D+++GD
Sbjct: 214 VSDVGLGKGRYYSVNVPIQGGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDP 273
Query: 271 LGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPY 330
+ FN+T G KC++++ + L L+LGGGG+ + N ARCWTY T V L + +E+P
Sbjct: 274 MCSFNMTPVGIGKCLKYILQWQLATLILGGGGFNLANTARCWTYLTGVILGKTLSSEIPD 333
Query: 331 NDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLR 371
+++F +GPD+ L I+PS ++N +++I + NL+
Sbjct: 334 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
>5EDU-B nrPDB
Length = 745
Score = 364 bits (934), Expect = e-101, Method: Composition-based stats.
Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 17/308 (5%)
Query: 15 YDGDVGNY--YYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDY 72
YD ++ N+ + HP P RI L GL + P A E+ HS +Y
Sbjct: 395 YDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEY 454
Query: 73 IKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGS--VASAVKLNKQQTD 130
+ LR+ E ++ F+ CP F QL+TG + + AV +
Sbjct: 455 VGHLRATEKMKTRELHRESSNFDSIYICP---STFACAQLATGAACRLVEAVLSGEVLNG 511
Query: 131 IAVNWAGGLHHAKKSEASGFCYVNDIVLAIL--ELLKYHQ-RVLYIDIDIHHGDGVEEAF 187
AV G HHA++ A GFC+ N + +A + + H R+L +D D+HHG+G + F
Sbjct: 512 AAVVRPPG-HHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVDWDVHHGNGTQHMF 570
Query: 188 YTTDRVMTVSFHKY--GEYFP--GTGDLRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFK 242
V+ VS H+Y G +FP G IG G + VN + D Y A +
Sbjct: 571 EDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWH 630
Query: 243 PVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSF-NLPMLMLGGG 301
++ + F P V++ G D+ GD LG ++ +G+A + + ++++ G
Sbjct: 631 RLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEG 690
Query: 302 GYTIRNVA 309
GY + +++
Sbjct: 691 GYNLTSIS 698
>1C3R-A nrPDB
Length = 375
Score = 350 bits (897), Expect = 1e-96, Method: Composition-based stats.
Identities = 114/316 (36%), Positives = 173/316 (54%), Gaps = 9/316 (2%)
Query: 18 DVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIK-FL 76
D G Y Y + HP+K R+ + L + E+ + A EE+ +H++DYI +
Sbjct: 11 DYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLM 70
Query: 77 RSIRPDNMSEYSKQMQRFNVG-EDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNW 135
+ R ++ + +++ ++N+G + PV +F L+TG +V + + K ++A N
Sbjct: 71 EAERSQSVPKGARE--KYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLK--GNVAFNP 126
Query: 136 AGGLHHAKKSEASGFCYVNDIVLAILELLK-YHQRVLYIDIDIHHGDGVEEAFYTTDRVM 194
AGG+HHA KS A+GFCY+N+ + I L K +R+LYID+D HH DGV+EAFY TD+V
Sbjct: 127 AGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVF 186
Query: 195 TVSFHKYGEY-FP-GTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMF 252
+S H+ EY FP G L +IG GKGK Y +N PL G++D + + + V E+F
Sbjct: 187 VLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVF 246
Query: 253 QPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCW 312
+P +LQ G+D L D L FNL+ K V+ + LGGGGY +AR W
Sbjct: 247 EPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAW 306
Query: 313 TYETAVALDTEIPNEL 328
T E+P +L
Sbjct: 307 TLIWCELSGREVPEKL 322
>5TD7-A nrPDB
Length = 678
Score = 325 bits (833), Expect = 3e-89, Method: Composition-based stats.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%)
Query: 15 YDGDVGNYYYGQGHP----MKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSD 70
+D ++ Y P P R+ +++ L +GL ++ + +A +E+ HS+
Sbjct: 11 FDEEMSRYKLLWTDPACEIEVPERLTVSYEALRTHGLAQRCKAVPVRQATEQEILLAHSE 70
Query: 71 DYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQ-- 128
+Y++ ++ N+ E +++N D ++ +L+ G ++ + K++
Sbjct: 71 EYLEAVKQTPGMNVEELMAFSKKYN---DVYFHQNIYHCAKLAAGATLQLVDSVMKREVR 127
Query: 129 TDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH--QRVLYIDIDIHHGDGVEEA 186
+A+ G HH+++S A+GFC N++ A L K + R+L +D D+HHG G++
Sbjct: 128 NGMALVRPPG-HHSQRSAANGFCVFNNVAFAALYAKKNYNLNRILIVDWDVHHGQGIQYC 186
Query: 187 FYTTDRVMTVSFHKY--GEYFPGT--GDLRDIGAGKGKYYAVNYPLRD-GIDDESYEAIF 241
F V+ S+H+Y ++P D +G GKG + +N P G+ + Y A F
Sbjct: 187 FEEDPSVLYFSWHRYEHQSFWPNLPESDYSSVGKGKGSGFNINLPWNKVGMTNSDYLAAF 246
Query: 242 KPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSF-NLPMLMLGG 300
V+ V F P V++ G DS GD G + A + M ++
Sbjct: 247 FHVLLPVAYEFDPELVIVSAGFDSAIGDPEGEMCALPEIFAHLTHLLMPLAAGKMCVVLE 306
Query: 301 GGYTIRNVARCWTYETAVALDTEIP 325
GG+ + ++ + L P
Sbjct: 307 GGFNLTSLGQSVCQTVHSLLGDPTP 331
>5IKK-A nrPDB
Length = 657
Score = 315 bits (806), Expect = 3e-86, Method: Composition-based stats.
Identities = 86/312 (27%), Positives = 139/312 (44%), Gaps = 28/312 (8%)
Query: 28 HPMKPHRIRMTHNLLLNYGLYRKM-------EIYRPHKANAEEMTKYHSDDYIKFLRSIR 80
HP P R+ + G + +A EE+ + HS + + R
Sbjct: 47 HPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEM--YDRVTN 104
Query: 81 PDNMSEYSKQMQRFNVGEDCPVFDGLFEFC-QLSTGGSV--ASAVKLNKQQTDIAVNWAG 137
+ MS + + D ++ FC +L+ G ++ +AV + + AV
Sbjct: 105 TEKMSH--EDLANLEKISDSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPP 162
Query: 138 GLHHAKKSEASGFCYVNDIVLAILELLKYH----QRVLYIDIDIHHGDGVEEAFYTTDRV 193
G HHA+ + GFC N++ + +L+ +RVL +D DIHHG+G + AFY V
Sbjct: 163 G-HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNV 221
Query: 194 MTVSFHKY--GEYFPGT--GDLRDIGAGKGKYYAVNYPLR-DGIDDESYEAIFKPVMSKV 248
+ VS H+Y G ++PGT G + G G G VN P G+ D Y F+ V+ V
Sbjct: 222 LYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPV 281
Query: 249 MEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLG-GGGYTIRN 307
F P V++ CG D+ +GD +G F LT +A + + + + GGY + +
Sbjct: 282 AYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQMLMGLADGKVFISLEGGYNLDS 341
Query: 308 VARCWTYETAVA 319
++ T AVA
Sbjct: 342 IS---TSALAVA 350
>4ZUN-A nrPDB
Length = 341
Score = 229 bits (584), Expect = 2e-60, Method: Composition-based stats.
Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 32/306 (10%)
Query: 30 MKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFL------------- 76
P R + G + P + E + K H Y+ FL
Sbjct: 28 EAPFRAEWILAAVKEAGFDD---VVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYK 84
Query: 77 ----------RSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNK 126
R P ++ Q+ + + + G +E S ++ A +
Sbjct: 85 GEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAA 144
Query: 127 Q-QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL-KYHQRVLYIDIDIHHGDGVE 184
+ ++ G HHA G+C++N+ +A LL K +++ +D+D HHG+G +
Sbjct: 145 GHKAAFSLCRPPG-HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQ 203
Query: 185 EAFYTTDRVMTVSFH-KYGEYFPG-TGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFK 242
+ FY V S H E FP G + G G G NYP+ G +
Sbjct: 204 DIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALT 263
Query: 243 PVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGG 302
+ ++ F A+V+ G D+ D + F LT + + + +P+L++ GG
Sbjct: 264 DSLKRIA-AFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGG 322
Query: 303 YTIRNV 308
Y + +
Sbjct: 323 YGVPEI 328
>3MEN-A nrPDB
Length = 362
Score = 213 bits (543), Expect = 1e-55, Method: Composition-based stats.
Identities = 86/341 (25%), Positives = 134/341 (39%), Gaps = 42/341 (12%)
Query: 2 AQTQGTKRKVCYYYDGDVGNY---YYGQGH----PMKPHRIRMTHNLLLNYGLYRKMEIY 54
AQTQG + Y++ ++ Y+ +G P R G +
Sbjct: 14 AQTQGPGSMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVR---- 69
Query: 55 RPHKANAEEMTKYHSDDYIKFLRSI----------------------RPDNMSEYSKQMQ 92
P + H Y++FL ++ P+ + Q
Sbjct: 70 EPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAA 129
Query: 93 RFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQ-TDIAVNWAGGLHHAKKSEASGFC 151
R CPV + + S ++A+A + A+ G HHA+ A GFC
Sbjct: 130 RHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG-HHARVDAAGGFC 188
Query: 152 YVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFH-KYGEYFPGTGD 210
Y+N+ +A L H RV +D D+HHG G++E FY V+ VS H ++P
Sbjct: 189 YLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAG 248
Query: 211 LRD-IGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEM--FQPSAVVLQCGSDSLS 267
D GAG+G Y VN P+ G S A F+ V + E+ F P A+VL G D
Sbjct: 249 FDDERGAGEGLGYNVNLPMPHG---SSEAAFFERVDDALRELRRFAPDALVLSLGFDVYR 305
Query: 268 GDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNV 308
D +T G + + + LP +++ GGY I ++
Sbjct: 306 DDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESL 346
>3KYC-B nrPDB
Length = 660
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 390 PEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEK 449
PE+ G + ED K I+ S D G + ++S ++ V D
Sbjct: 571 PEKVGPKQAEDAAKSITNGSDD-----------------GAQPSTSTAQEQDDVLIVDSD 613
Query: 450 EKDPEEKKEVTEEEKTKEEKPEAK 473
E+D +V+EEE++++ K + K
Sbjct: 614 EEDSSNNADVSEEERSRKRKLDEK 637
>6GYL-Q nrPDB
Length = 735
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 397 DEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTE---------- 446
DE+D D +S+ + +EEF+D +E N + +R+K E
Sbjct: 455 DEDDRDD-----NSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLR 509
Query: 447 DEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVKLA 482
DE+ E+ E+ E+K E+ K ++ +LA
Sbjct: 510 DEEAPSENEEDELFGEKKIDEDGERIKKALQKTELA 545
>4V1O-Q nrPDB
Length = 734
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 397 DEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTE---------- 446
DE+D D +S+ + +EEF+D +E N + +R+K E
Sbjct: 450 DEDDRDD-----NSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLR 504
Query: 447 DEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVKLA 482
DE+ E+ E+ E+K E+ + K ++ +LA
Sbjct: 505 DEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELA 540
>4MLC-A nrPDB
Length = 356
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 158 LAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLR 212
LAI + H+R++ D +G+G+ AF R ++ Y+ DL
Sbjct: 133 LAIYLAEQGHERMVIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLE 187
>6GMH-U nrPDB
Length = 776
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 391 EESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKE 450
E+ G ED+ D I +SD EE SDE+ +NS + +K + E+ +
Sbjct: 253 EKWGREDKSDQSDDEKIQNSDD----EERAQGSDEDK---LQNSDDDEKMQNTDDEERPQ 305
Query: 451 KDPEEKKEVTEEEK--TKEEKPEAKGVKEE 478
+E+++++EEEK + +E+P A +E
Sbjct: 306 LSDDERQQLSEEEKANSDDERPVASDNDDE 335
Score = 29.7 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 380 QMQAIPEDAIPEESGDE--DEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNF 437
+ Q ED + DE D ++R + +++ EEE ++SD+E N
Sbjct: 277 RAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDN---- 332
Query: 438 KKAKRVKTEDEKEK-DPEEKKEVTEEEK---TKEEKPEA 472
+DEK+ D EE+ ++++EEK + +E+P+A
Sbjct: 333 --------DDEKQNSDDEEQPQLSDEEKMQNSDDERPQA 363
>5O6D-A nrPDB
Length = 545
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 357 EYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKRISICSSDKRIAC 416
E+++ +E L P P +++ E+ ++ E E+ + ++ S ++ +
Sbjct: 306 EFMDPETYFCYEALTNDPSMPPEKLETWAENPSKLKAAMEREQSDGEESAVAS--RKSSV 363
Query: 417 EEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKE 458
+E F+ SD +SS F KRVKT+DE + ++KE
Sbjct: 364 KEGFAKSDIGEPVSPLDSSVFDFMKRVKTDDEVVLENIKRKE 405
>1WOQ-A nrPDB
Length = 267
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 229 RDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIK 279
RDG+ + Y + + S V +F P ++ G + + L L
Sbjct: 190 RDGLSWDEYSVLLQRYFSHVEFLFSPELFIVGGGISKRADEYLPNLRLRTP 240
>1O20-A nrPDB
Length = 427
Score = 29.7 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 432 KNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEV 479
+N++ +K K +K EK E +KE+ E + EK +GVKE +
Sbjct: 31 RNATTREKNKAIKKIAEKLD--ERRKEILEANRIDVEKARERGVKESL 76
>2PCR-A nrPDB
Length = 264
Score = 29.7 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 429 GGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKE 467
GG+ NF K K+ E++ EKD + T EE+ KE
Sbjct: 18 GGQVLKENFGKVKKENIEEKGEKDFVSYVDKTSEERIKE 56
>6FSZ-II nrPDB
Length = 301
Score = 29.7 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 443 VKTEDEKEKDPEEKKE----VTEEEKTKEEKP 470
V+ E+EK+ D EE++E TEEEK+ + P
Sbjct: 73 VRCEEEKKTDQEEEREGTDQSTEEEKSVDASP 104
>2FKJ-A nrPDB
Length = 366
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 410 SDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDE-KEKDPEEKKEVTEEEKTK-E 467
S+K+I ++ S ++ E G + +A + TE++ EK +K++T +K+ E
Sbjct: 111 SEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTE 170
Query: 468 EKPEAKGVKEEVKL 481
EK KG E K+
Sbjct: 171 EKFNEKGELSEKKI 184
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 410 SDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDE-KEKDPEEKKEVTEEEKTK-E 467
S+K+I ++ S ++ E G + +A + TE++ EK +K++T +K+ E
Sbjct: 157 SEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTE 216
Query: 468 EKPEAKG-VKEEV 479
EK KG V E++
Sbjct: 217 EKFNEKGEVSEKI 229
>2A42-B nrPDB
Length = 260
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 222 YAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDR 270
Y V+ PL E Y +F+P V++ +Q CG+DS S +
Sbjct: 65 YVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREP 113
>5WLC-NA nrPDB
Length = 593
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 415 ACEEEFSDSDEEGEGGRKNSSNFKKAK---RVKTEDEKEKDPEEKKEVTEEEKTKEEKPE 471
A EE+ +++ GE KN S+F+K + R + E + + EKK + E +++PE
Sbjct: 278 ADEEDEPNAEGVGEASDKNLSSFEKQQIEIRKQIEQLENEAVAEKKWSLKGEVKAKDRPE 337
Query: 472 AKGVKEEVKL 481
+ EE++
Sbjct: 338 DALLTEELEF 347
>6ID1-U nrPDB
Length = 894
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 406 SICSSDKRIA--CEEEFSD-SDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEE 462
S+CS ++ EE + S +G G +K+S+ +K T DE + PE+ +E +++
Sbjct: 400 SLCSGFRKPTKNSEERLTSWSRSDGRGDKKHSN--QKPSETST-DEHQHVPEDPREKSQD 456
Query: 463 EKTKEEKPEAKGVKE 477
E +++ P+ + +++
Sbjct: 457 EVLRDDPPKKEHLRD 471
>2FKG-A nrPDB
Length = 320
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 410 SDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDE-KEKDPEEKKEVTEEEKTK-E 467
S+K+I ++ S ++ E G + +A + TE++ EK +K++T +K+ E
Sbjct: 111 SEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTE 170
Query: 468 EKPEAKG-VKEEV 479
EK KG V E++
Sbjct: 171 EKFNEKGEVSEKI 183
>5OQL-H nrPDB
Length = 270
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 418 EEFSDSDEEGEGGRKNSSN-----FKKAKRVKTEDEKEKDPEEKKEVTEEE 463
EEF+ ++E E G K + F+ + + EK+K EE K+ EEE
Sbjct: 141 EEFNSDEDEEESGSKQAKPKKIVFFEGVEERQQALEKQKADEEMKDYDEEE 191
>2L08-A nrPDB
Length = 97
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 328 LPYNDYFEYFGPDFKLHI 345
LP +DYFE+F D L+
Sbjct: 33 LPAHDYFEFFAADLSLYP 50
>2I1J-A nrPDB
Length = 575
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 415 ACEEEFSDSDEEGEGGRK---NSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPE 471
A +EE E + + + N + A+R K EDE EE + +E + K+ E
Sbjct: 377 AAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDS--E 434
Query: 472 AKGVKEEVKLA 482
+ ++EEV+ A
Sbjct: 435 TRRLQEEVEDA 445
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.133 0.364
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,032,455
Number of Sequences: 36641
Number of extensions: 875412
Number of successful extensions: 4524
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 3277
Number of HSP's gapped (non-prelim): 804
length of query: 482
length of database: 10,336,785
effective HSP length: 101
effective length of query: 381
effective length of database: 6,636,044
effective search space: 2528332764
effective search space used: 2528332764
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 61 (28.1 bits)