BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= O00625
         (290 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5JCT-A nrPDB                                                          599   e-172
6D0P-A nrPDB                                                          140   8e-34
6D0G-A nrPDB                                                           92   3e-19
1TQ5-A nrPDB                                                           59   3e-09
5WEG-A nrPDB                                                           32   0.40 
4PE5-B nrPDB                                                           31   0.57 
2Q4J-A nrPDB                                                           31   0.68 
2RB7-A nrPDB                                                           30   0.90 
4HL7-A nrPDB                                                           30   1.8  

>5JCT-A nrPDB
          Length = 310

 Score =  599 bits (1545), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG 60
           MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
Sbjct: 21  MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG 80

Query: 61  FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL 120
           FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
Sbjct: 81  FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL 140

Query: 121 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA 180
           RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
Sbjct: 141 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA 200

Query: 181 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL 240
           KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
Sbjct: 201 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL 260

Query: 241 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN 290
           IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
Sbjct: 261 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN 310


>6D0P-A nrPDB
          Length = 293

 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/257 (36%), Positives = 134/257 (52%), Gaps = 18/257 (7%)

Query: 34  KNLDPFLLFDEFK------GGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNP 87
           + L PFLL D              G   HPHRGFETV+   +G  + H+D  G  G +  
Sbjct: 36  QTLSPFLLLDYAAPYNFSPTTEQQGVGSHPHRGFETVTIAYQG-EVTHKDSSGGGGTIKT 94

Query: 88  GDLQWMTAGRGILHAEMPCSEEPAHG-----LQLWVNLRSSEKMVEPQYQELKSEEIPKP 142
           GD+QWMTAG G+LH E    E   HG     +QLWVNL S  KM   +YQ +++++IP  
Sbjct: 95  GDVQWMTAGAGVLHEEFHSPEFAEHGGLFEMVQLWVNLPSHSKMTPGKYQAIEAKDIPDI 154

Query: 143 SKD--GVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGD 200
           + D  G  + VI+GE    K    T +P    D KL  G KH+  +P+G T+ +  + G 
Sbjct: 155 ALDEHGSHLRVIAGEYADAKGAATTFSPLNVWDGKLVKGQKHTLYVPEGHTTLVVVLEGA 214

Query: 201 VYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNT 260
           V     +   ++E    A+L   + V+      + + F+++ G+PL EP+  +GPFVMNT
Sbjct: 215 V---VVNDTNRLEGKTVAILSR-EGVEFSLNAEEDTKFLVLTGQPLNEPIEGYGPFVMNT 270

Query: 261 NEEISQAILDFRNAKNG 277
             EI +AI DF   K G
Sbjct: 271 KAEIMEAINDFNRGKFG 287


>6D0G-A nrPDB
          Length = 318

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 16/261 (6%)

Query: 14  REQSEGVGARVRRSIGRPELKNLDPFLLFDE-----FKGGRPGGFPDHPHRGFETVSYLL 68
           R    G G  ++R++   + + +  +   D      F  G       HPH G +T ++++
Sbjct: 32  RSAEIGQGTVIKRALPSRQKRMIGAWCFLDHAGPVTFPAGNGLDVGPHPHIGLQTFTWMI 91

Query: 69  EGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEM-PCSEEPAHGLQLWVNLRSSEKMV 127
           EG +M H D  G    + P  +  MTAG GI H E+ P +E   H  QLW+ L   ++ +
Sbjct: 92  EG-TMMHTDSLGSKQLIRPKQVNLMTAGHGISHTEVAPDTETQMHAAQLWIALPDHKRNM 150

Query: 128 EPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIP 187
           +P+++     ++P   KDG+   V+ GE L   S V   TP + +D       K   P+ 
Sbjct: 151 DPKFEHYP--DLPVVEKDGLEFTVLVGEYLETTSPVVVHTPLVGVDLIATQDTKTRIPLN 208

Query: 188 KGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEG-DSVQVENKDPKRSHFVLIAGEPL 246
             +      + G  ++       ++   +  VL  G + +++E K  K +  +LI GEP 
Sbjct: 209 PEFEYGFMALDGVAHVN----GHELTADNMVVLDTGLNEIEIEVK--KGNRVLLIGGEPF 262

Query: 247 REPVIQHGPFVMNTNEEISQA 267
             P++    FV  T +++ +A
Sbjct: 263 ETPILLWWNFVARTMDDLKEA 283


>1TQ5-A nrPDB
          Length = 242

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 52  GFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEM-PCSEEP 110
           GF  HPH+  E ++Y+LEG ++ H+D  G+  ++  G+ Q M+AG GI H+E  P S E 
Sbjct: 53  GFGTHPHKDMEILTYVLEG-TVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTER 111

Query: 111 AHGLQLWVNLRSSEKMVEPQYQELKSEEI 139
            H  Q+W+     E  + P+Y++ + + +
Sbjct: 112 LHLYQIWI--MPEENGITPRYEQRRFDAV 138


>5WEG-A nrPDB
          Length = 476

 Score = 31.6 bits (70), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 115 QLWVNLRSSEKMVEPQYQELKSEEIPKPSK-DGVTVAVISGEALGIKSKVYTRTPTLYLD 173
            LWVNL++ +++VE   + LK E IP P + DGV V  +   A              + D
Sbjct: 303 NLWVNLKAIKRLVEA--EALKMEIIPNPKEVDGVKVLQLETAA---------GAAIRFFD 351

Query: 174 FKLDPGAKHSQPIPKGWTSFIYTISGDVY 202
             +      S+ +P   TS +  +  D+Y
Sbjct: 352 KAIGINVPRSRFLPVKATSDLLLVQSDLY 380


>4PE5-B nrPDB
          Length = 820

 Score = 31.2 bits (69), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 203 IGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNE 262
           +   DA +K + HH +V+   + V +   DPK    +    + + +  IQ   F  +T++
Sbjct: 22  VAIKDAHEKDDFHHLSVVPRVELVAMNETDPKS--IITRICDLMSDRKIQGVVFADDTDQ 79

Query: 263 EISQAILDFRNAKN 276
           E    ILDF +A+ 
Sbjct: 80  EAIAQILDFISAQT 93


>2Q4J-A nrPDB
          Length = 469

 Score = 30.8 bits (68), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 115 QLWVNLRSSEKMVEPQYQELKSEEIPKPSK-DGVTV 149
            LWVNL++ +K+VE     LK E IP P + DGV V
Sbjct: 296 NLWVNLKAIKKLVEA--DALKMEIIPNPKEVDGVKV 329


>2RB7-A nrPDB
          Length = 364

 Score = 30.4 bits (67), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 91  QWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKS 136
           Q +T  +GI+  ++ C+ + AHG + W+ + + + ++E  Y  LK+
Sbjct: 169 QVITKEKGIIDIKLTCTGKAAHGARPWMGVNAVDLLME-DYTRLKT 213


>4HL7-A nrPDB
          Length = 446

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)

Query: 71  GSMAHEDFCGHTGKMNPGDLQ------WMTAGRGIL 100
           G++AHE F GH   +N  D Q      W+TA  G+L
Sbjct: 228 GTIAHEWFMGHQALVNERDSQQVALERWLTAFDGML 263


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5JCT-A nrPDB                                                          468   e-133
6D0G-A nrPDB                                                          352   9e-98
6D0P-A nrPDB                                                          318   2e-87
1TQ5-A nrPDB                                                          140   8e-34

Sequences not found previously or not previously below threshold:

6NDR-A nrPDB                                                           37   0.010
3L8F-A nrPDB                                                           32   0.38 
3L1U-A nrPDB                                                           32   0.38 
2Q1Z-B nrPDB                                                           31   0.77 
4EQM-A nrPDB                                                           29   2.3  
5YXT-A nrPDB                                                           29   3.6  
6AOY-A nrPDB                                                           27   6.7  
6FK3-A nrPDB                                                           27   9.8  


CONVERGED!
>5JCT-A nrPDB
          Length = 310

 Score =  468 bits (1205), Expect = e-133,   Method: Composition-based stats.
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG 60
           MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
Sbjct: 21  MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG 80

Query: 61  FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL 120
           FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
Sbjct: 81  FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL 140

Query: 121 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA 180
           RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
Sbjct: 141 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA 200

Query: 181 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL 240
           KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
Sbjct: 201 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL 260

Query: 241 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN 290
           IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
Sbjct: 261 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN 310


>6D0G-A nrPDB
          Length = 318

 Score =  352 bits (904), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 16/261 (6%)

Query: 14  REQSEGVGARVRRSIGRPELKNLDPFLLFDE-----FKGGRPGGFPDHPHRGFETVSYLL 68
           R    G G  ++R++   + + +  +   D      F  G       HPH G +T ++++
Sbjct: 32  RSAEIGQGTVIKRALPSRQKRMIGAWCFLDHAGPVTFPAGNGLDVGPHPHIGLQTFTWMI 91

Query: 69  EGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEM-PCSEEPAHGLQLWVNLRSSEKMV 127
           EG +M H D  G    + P  +  MTAG GI H E+ P +E   H  QLW+ L   ++ +
Sbjct: 92  EG-TMMHTDSLGSKQLIRPKQVNLMTAGHGISHTEVAPDTETQMHAAQLWIALPDHKRNM 150

Query: 128 EPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIP 187
           +P+++     ++P   KDG+   V+ GE L   S V   TP + +D       K   P+ 
Sbjct: 151 DPKFEHYP--DLPVVEKDGLEFTVLVGEYLETTSPVVVHTPLVGVDLIATQDTKTRIPLN 208

Query: 188 KGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEG-DSVQVENKDPKRSHFVLIAGEPL 246
             +      + G  ++       ++   +  VL  G + +++E K  K +  +LI GEP 
Sbjct: 209 PEFEYGFMALDGVAHVN----GHELTADNMVVLDTGLNEIEIEVK--KGNRVLLIGGEPF 262

Query: 247 REPVIQHGPFVMNTNEEISQA 267
             P++    FV  T +++ +A
Sbjct: 263 ETPILLWWNFVARTMDDLKEA 283


>6D0P-A nrPDB
          Length = 293

 Score =  318 bits (815), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 92/257 (35%), Positives = 131/257 (50%), Gaps = 18/257 (7%)

Query: 34  KNLDPFLLFDEF------KGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNP 87
           + L PFLL D              G   HPHRGFETV+   +G  + H+D  G  G +  
Sbjct: 36  QTLSPFLLLDYAAPYNFSPTTEQQGVGSHPHRGFETVTIAYQG-EVTHKDSSGGGGTIKT 94

Query: 88  GDLQWMTAGRGILHAEMPCSEEPAHG-----LQLWVNLRSSEKMVEPQYQELKSEEIPKP 142
           GD+QWMTAG G+LH E    E   HG     +QLWVNL S  KM   +YQ +++++IP  
Sbjct: 95  GDVQWMTAGAGVLHEEFHSPEFAEHGGLFEMVQLWVNLPSHSKMTPGKYQAIEAKDIPDI 154

Query: 143 SKD--GVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGD 200
           + D  G  + VI+GE    K    T +P    D KL  G KH+  +P+G T+ +      
Sbjct: 155 ALDEHGSHLRVIAGEYADAKGAATTFSPLNVWDGKLVKGQKHTLYVPEGHTTLVVV---L 211

Query: 201 VYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNT 260
                 +   ++E    A+L   + V+      + + F+++ G+PL EP+  +GPFVMNT
Sbjct: 212 EGAVVVNDTNRLEGKTVAILSR-EGVEFSLNAEEDTKFLVLTGQPLNEPIEGYGPFVMNT 270

Query: 261 NEEISQAILDFRNAKNG 277
             EI +AI DF   K G
Sbjct: 271 KAEIMEAINDFNRGKFG 287


>1TQ5-A nrPDB
          Length = 242

 Score =  140 bits (352), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 18/203 (8%)

Query: 50  PGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEM-PCSE 108
             GF  HPH+  E ++Y+LEG ++ H+D  G+  ++  G+ Q M+AG GI H+E  P S 
Sbjct: 51  GQGFGTHPHKDMEILTYVLEG-TVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSST 109

Query: 109 EPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTP 168
           E  H  Q+W+     E  + P+Y++ + + +      G  + V+S +A     KV+    
Sbjct: 110 ERLHLYQIWI--MPEENGITPRYEQRRFDAV-----QGKQL-VLSPDARDGSLKVHQDME 161

Query: 169 TLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQV 228
                   D  + H   I      +I  + G+V I    A         A+  E     +
Sbjct: 162 LYRWALLKDEQSVHQ--IAAERRVWIQVVKGNVTINGVKAS---TSDGLAIWDEQ---AI 213

Query: 229 ENKDPKRSHFVLIAGEPLREPVI 251
                  S  +L    P+   V 
Sbjct: 214 SIHADSDSEVLLFDLPPVSGRVE 236


>6NDR-A nrPDB
          Length = 195

 Score = 37.0 bits (84), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 146 GVTVAVISGEALGIKSKVYTRTPTLY-LDFKLDPGAKHSQP-IPKGWTSFIYTISGDV-- 201
           G  V+V++GE   +   +   +PT       +  G    Q  IPKG+    Y +S     
Sbjct: 78  GKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLSAMADF 137

Query: 202 --------YIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPL 246
                   +   + +   ++P        G+ VQ+  KD       LI  E L
Sbjct: 138 AYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQVQLSPKDAAAKLLNLIDAELL 190


>3L8F-A nrPDB
          Length = 187

 Score = 31.6 bits (70), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 221 GEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAI 268
            + + +Q        +  ++  G+P+         +V+N+  ++ QAI
Sbjct: 136 DKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAI 183


>3L1U-A nrPDB
          Length = 211

 Score = 31.6 bits (70), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 221 GEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAI 268
            + + +Q        +  ++  G+P+         +V+N+  ++ QAI
Sbjct: 156 DKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAI 203


>2Q1Z-B nrPDB
          Length = 195

 Score = 30.9 bits (68), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 50  PGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHT 82
               PDH HRG E ++ +L+G      D  G  
Sbjct: 135 GQAVPDHGHRGLE-LTLVLQGAFRDETDRFGAG 166


>4EQM-A nrPDB
          Length = 294

 Score = 29.0 bits (63), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 175 KLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKI-----EPHHTAVLGEGDSVQ-V 228
           KL  G   +  + +     I      ++I P + ++ +     E H+++ L   + V  +
Sbjct: 18  KLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMI 77

Query: 229 ENKDPKRSHFVL---IAGEPLREPVIQHGPFVMNTNEEISQAILD 270
           +  +    ++++   I G  L E +  HGP  ++T    +  ILD
Sbjct: 78  DVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILD 122


>5YXT-A nrPDB
          Length = 382

 Score = 28.6 bits (62), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 228 VENKDPKRSHFVLIAGEPLREPVI 251
             +K+P+      I+GEP  EP +
Sbjct: 293 FADKEPEDYRRYTISGEPFEEPAL 316


>6AOY-A nrPDB
          Length = 166

 Score = 27.4 bits (59), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 25/76 (32%)

Query: 168 PTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQ 227
           P       LD G K   P+P          +G V I   +   +I  +  A LG G+   
Sbjct: 84  PLTTNTNVLDIGDKTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATLGSGNPRN 143

Query: 228 VENKDPKRSHFVLIAG 243
                   +  V+  G
Sbjct: 144 FTWNIISNNSVVMPTG 159


>6FK3-A nrPDB
          Length = 536

 Score = 27.0 bits (58), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 195 YTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHG 254
             + G  +       Q+       ++      + + +  +R    L+ G PL  P + +G
Sbjct: 284 LAVEGAWWSAFATGGQRCTSAGNILVDAPIYEEFKRRFLERVEATLV-GNPLLHPEVTYG 342

Query: 255 PFV 257
           PF+
Sbjct: 343 PFI 345


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.306    0.127    0.331 

Lambda     K      H
   0.267   0.0387    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,970,574
Number of Sequences: 36641
Number of extensions: 451118
Number of successful extensions: 787
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 24
length of query: 290
length of database: 10,336,785
effective HSP length: 96
effective length of query: 194
effective length of database: 6,819,249
effective search space: 1322934306
effective search space used: 1322934306
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 58 (27.0 bits)