BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= C7AJA4 (406 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3HIY-A nrPDB 798 0.0 5W0B-A nrPDB 54 1e-07 4UD4-A nrPDB 52 3e-07 5A2X-A nrPDB 45 5e-05 3NYB-A nrPDB 41 0.001 5WU6-A nrPDB 39 0.003 5WU3-A nrPDB 39 0.004 2B4V-A nrPDB 30 1.4 5OQL-K nrPDB 29 2.9 1AVC-A nrPDB 29 3.8 4MBG-A nrPDB 28 8.3 3J4S-A nrPDB 28 9.6 >3HIY-A nrPDB Length = 384 Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/383 (100%), Positives = 383/383 (100%) Query: 3 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTP 62 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTP Sbjct: 2 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTP 61 Query: 63 HSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTD 122 HSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTD Sbjct: 62 HSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTD 121 Query: 123 GVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNS 182 GVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNS Sbjct: 122 GVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNS 181 Query: 183 FTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGE 242 FTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGE Sbjct: 182 FTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGE 241 Query: 243 AVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAE 302 AVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAE Sbjct: 242 AVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAE 301 Query: 303 HKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLR 362 HKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLR Sbjct: 302 HKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLR 361 Query: 363 EMLIDKESELKFDEVFRESDTVP 385 EMLIDKESELKFDEVFRESDTVP Sbjct: 362 EMLIDKESELKFDEVFRESDTVP 384 >5W0B-A nrPDB Length = 389 Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 55/336 (16%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKR----MTRFGKEASA 102 + LFGS +GF SD + +T + G+E + + R + R ++ S Sbjct: 64 TKLSLFGSSKNGFGFKQSDLAVCMT-------INGLETAEGLDCVRTIEELARVLRKHS- 115 Query: 103 MGMEDVRYIR-ARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDF-YGAYI 160 G+ ++ I A++P+V+F +G+ D+S+ N + N+++L A + P Y Y Sbjct: 116 -GLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCYT 174 Query: 161 HLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG--LLPVFSKP-TGEFGELTVADA 217 +K + K ++ R + +S+ T M L LQ+ ++PV + GE D Sbjct: 175 --MKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQQRNPPVIPVLQEIYKGEKKPEIFVDG 232 Query: 218 EMLL---QEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHR 274 + Q +LP + + E +G+ ++ L RF Y ++DF +S+ Sbjct: 233 WNIYFFDQIDELPTYWSECGKNTESVGQ-LWLGLLRF--YTEEFDFKEHVISI------- 282 Query: 275 TVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDEN-DFSASMQNETTQRPSNSPYVV 333 R LL + K+ K+I ED P D N + A + + T +++ Sbjct: 283 --------RRKSLLTTFKKQWTSKYIV--IED-PFDLNHNLGAGLSRKMTN------FIM 325 Query: 334 EDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE 369 + F+N GRRV V+ +++ E D + Sbjct: 326 KAFIN----GRRVFGIPVKGFPKDYPSKMEYFFDPD 357 >4UD4-A nrPDB Length = 366 Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 81/358 (22%), Positives = 132/358 (36%), Gaps = 72/358 (20%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGME 106 A + FGS SG +SD D+ + + RV Q++ +F +E A G E Sbjct: 44 AELVAFGSLESGLALKNSDMDLCVLMDS---------RV--QSDTIALQFYEELIAEGFE 92 Query: 107 DVRYIRARIPVVQFTDGV-----TGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIH 161 ARIP+++ T CD+ N + N+ +L + ++ + Sbjct: 93 GAFLQAARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARL-KPMVL 151 Query: 162 LVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLL 221 LVK W K +++ +P T +S+ M L L + PVF +LL Sbjct: 152 LVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVF--------------PNLLL 197 Query: 222 QEFKLPPIYDSLHDD-DEKLGE--------AVFFCLQRFAEYYAKYDFSA--GTVSLIHP 270 K I D D+KL + ++ L F +YA Y F V+ P Sbjct: 198 SPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFAFYA-YAFEPREKVVTFRRP 256 Query: 271 RRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSP 330 + T E+ E GS ++ +++I E+ F S Sbjct: 257 DGYLTKQEKGWTSATEHTGSADQIIKDRYILAI-------EDPFEISH------------ 297 Query: 331 YVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELKFDEVFRESDTVPRFQ 388 N GR V +S + I+ EF +L + + +D +F E+ PR Q Sbjct: 298 ----------NVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPIPPRRQ 345 >5A2X-A nrPDB Length = 555 Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 21/239 (8%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAM--- 103 + V+ FGS V+ F D D+ L + + M++ + +M R E A Sbjct: 206 STVKPFGSSVNTFGKLGCDVDMFLDFHDIQKHATKMKKGPFEMEYQMKRLPSERLATQKI 265 Query: 104 -------------GMEDVRYI-RARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIR 149 G V+ I AR P+V+F+ TG CD+S+ N + S++L Sbjct: 266 LSIIGDCLDNFGPGYSSVQKILNARCPLVKFSHQPTGFQCDLSVSNSIAIRCSELLYIYG 325 Query: 150 QVFPDFYGAYIHLVKAWGKAREVIAPERSTF-NSFTVTTMALMVLQELGLLPVFSKPTGE 208 + P A + ++ W + + T+ +F++T M + LQ+ P + Sbjct: 326 CLDPRVR-ALVFSLRCWARVHGLTNSVPGTWITNFSLTMMIMFFLQKRS--PPIIPTLDQ 382 Query: 209 FGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSL 267 EL + ++ + + D K E + L F +Y+ +DF +++L Sbjct: 383 LKELADEKDKHVIGGYDCSFVSDLSKIKPTKNTETLDELLCDFFQYFGNFDFRKNSLNL 441 >3NYB-A nrPDB Length = 323 Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNN--KRMTRFGKEASAMG 104 A + +FGS+ + P SD D +T L G E +NN + K+ A Sbjct: 60 ADLHVFGSYSTDLYLPGSDIDCVVTSE-----LGGKE---SRNNLYSLASHLKKKNLATE 111 Query: 105 MEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGA--YIHL 162 +E V +AR+P+++F + +GIH VS G+E +K+ IR+ D G + + Sbjct: 112 VEVVA--KARVPIIKFVEPHSGIHIAVSFERTNGIEAAKL---IREWLDDTPGLRELVLI 166 Query: 163 VKAWGKAREVIAPERSTFNSFTVTTMALMVLQ 194 VK + AR + F++ + L Sbjct: 167 VKQFLHARRLNNVHTGGLGGFSIICLVFSFLH 198 >5WU6-A nrPDB Length = 485 Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 4/101 (3%) Query: 113 ARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREV 172 AR PVV+F +G+H DVS+ N + NS+ L ++ ++ ++AW + R Sbjct: 242 ARRPVVKFAHRPSGLHGDVSLSNRLALHNSRFL-SLASELDGRVRPLVYTLRAWAQGRG- 299 Query: 173 IAPERSTFNSFTVTTMALMVLQ--ELGLLPVFSKPTGEFGE 211 ++ +++ +T + + LQ + +LP S+ T + GE Sbjct: 300 LSGSGPLLSNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGE 340 >5WU3-A nrPDB Length = 573 Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 4/101 (3%) Query: 113 ARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREV 172 AR PVV+F +G+H DVS+ N + NS+ L ++ ++ ++AW + R Sbjct: 155 ARRPVVKFAHRPSGLHGDVSLSNRLALHNSRFL-SLASELDGRVRPLVYTLRAWAQGRG- 212 Query: 173 IAPERSTFNSFTVTTMALMVLQ--ELGLLPVFSKPTGEFGE 211 ++ +++ +T + + LQ + +LP S+ T + GE Sbjct: 213 LSGSGPLLSNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGE 253 >2B4V-A nrPDB Length = 468 Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 21/114 (18%) Query: 163 VKAWGKAREVIAPERSTFNSFTVTTM---ALMVLQELGLLPVFSKPTGEFGELTVADAEM 219 VKAWGKA V A + S+ VT M L+V +++ + +S P Sbjct: 280 VKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLP----------HPAH 329 Query: 220 LLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYA-KYDFSAGTVSLIHPRR 272 L + P+YD D +LG L F +YA +D+ VSL RR Sbjct: 330 LPRYPDFSPLYDC---DPTELGR----LLHGFFIFYAHHFDYEREVVSLNRNRR 376 >5OQL-K nrPDB Length = 938 Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Query: 367 DKESELKFDEVFRESDTVPRFQGFEGVGTRDHRVKTFR 404 D++SE+ DE F ESD RF+GF G++ H+ T + Sbjct: 139 DEDSEIDSDEAFGESDE-ERFEGFVFGGSKSHKKGTKK 175 >1AVC-A nrPDB Length = 673 Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 227 PPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLE 286 I L D EKL AV C++ AEY+A+ F A + + R + + V R L+ Sbjct: 228 ASIRGELSGDFEKLMLAVVKCIRSTAEYFAERLFKA--MKGLGTRDNTLIRIMVSRSELD 285 Query: 287 LLGSRK--RLEWEKHI 300 +L R+ R ++EK + Sbjct: 286 MLDIREIFRTKYEKSL 301 >4MBG-A nrPDB Length = 367 Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Query: 307 GPLDENDFSASMQNET--TQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNR 360 GP DEN+F A + N T + P V ED V+ +Q S+ R ++ NR Sbjct: 209 GPRDENEFDAGLHNTTGPSSEKGRLPVVDEDLVD-----SELQYSQSRILEAPENR 259 >3J4S-A nrPDB Length = 484 Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 17/84 (20%) Query: 288 LGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQ-------RPSNSPYVVEDFVNYV 340 +G + +++ H E+ LDE FSA Q ET RPSN+ DF V Sbjct: 283 IGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNA-----DFFKDV 337 Query: 341 NCGRRVQASRVRHIQQEFNRLREM 364 N +R+R+ E+ RL E+ Sbjct: 338 NT-----ENRIRNTLGEYKRLDEI 356 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3HIY-A nrPDB 563 e-161 4UD4-A nrPDB 310 8e-85 5W0B-A nrPDB 290 1e-78 5A2X-A nrPDB 264 4e-71 3NYB-A nrPDB 142 2e-34 Sequences not found previously or not previously below threshold: 5WU3-A nrPDB 116 1e-26 5WU6-A nrPDB 116 1e-26 2NOM-A nrPDB 72 6e-13 2B4V-A nrPDB 60 2e-09 4LT6-A nrPDB 42 5e-04 1Q78-A nrPDB 36 0.021 2O1P-A nrPDB 31 0.79 5G4A-B nrPDB 29 3.6 3IJ3-A nrPDB 28 5.8 4TWE-A nrPDB 28 6.6 2O5R-A nrPDB 28 7.6 >3HIY-A nrPDB Length = 384 Score = 563 bits (1450), Expect = e-161, Method: Composition-based stats. Identities = 383/383 (100%), Positives = 383/383 (100%) Query: 3 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTP 62 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTP Sbjct: 2 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTP 61 Query: 63 HSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTD 122 HSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTD Sbjct: 62 HSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTD 121 Query: 123 GVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNS 182 GVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNS Sbjct: 122 GVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNS 181 Query: 183 FTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGE 242 FTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGE Sbjct: 182 FTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGE 241 Query: 243 AVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAE 302 AVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAE Sbjct: 242 AVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAE 301 Query: 303 HKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLR 362 HKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLR Sbjct: 302 HKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLR 361 Query: 363 EMLIDKESELKFDEVFRESDTVP 385 EMLIDKESELKFDEVFRESDTVP Sbjct: 362 EMLIDKESELKFDEVFRESDTVP 384 >4UD4-A nrPDB Length = 366 Score = 310 bits (793), Expect = 8e-85, Method: Composition-based stats. Identities = 79/358 (22%), Positives = 130/358 (36%), Gaps = 72/358 (20%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGME 106 A + FGS SG +SD D+ + + Q++ +F +E A G E Sbjct: 44 AELVAFGSLESGLALKNSDMDLCVLMDSRV-----------QSDTIALQFYEELIAEGFE 92 Query: 107 DVRYIRARIPVVQFTDGV-----TGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIH 161 ARIP+++ T CD+ N + N+ +L + ++ + Sbjct: 93 GAFLQAARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARL-KPMVL 151 Query: 162 LVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLL 221 LVK W K +++ +P T +S+ M L L + PVF +LL Sbjct: 152 LVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVF--------------PNLLL 197 Query: 222 QEFKLPPIYDSLHDD-DEKLGE--------AVFFCLQRFAEYYAKYDFSA--GTVSLIHP 270 K I D D+KL + ++ L F +YA Y F V+ P Sbjct: 198 SPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFAFYA-YAFEPREKVVTFRRP 256 Query: 271 RRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSP 330 + T E+ E GS ++ +++I E+ F S Sbjct: 257 DGYLTKQEKGWTSATEHTGSADQIIKDRYILAI-------EDPFEISH------------ 297 Query: 331 YVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELKFDEVFRESDTVPRFQ 388 N GR V +S + I+ EF +L + + +D +F E+ PR Q Sbjct: 298 ----------NVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPIPPRRQ 345 >5W0B-A nrPDB Length = 389 Score = 290 bits (741), Expect = 1e-78, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 55/336 (16%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKR----MTRFGKEASA 102 + LFGS +GF SD + +T + G+E + + R + R ++ S Sbjct: 64 TKLSLFGSSKNGFGFKQSDLAVCMT-------INGLETAEGLDCVRTIEELARVLRKHS- 115 Query: 103 MGMEDVRYIR-ARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDF-YGAYI 160 G+ ++ I A++P+V+F +G+ D+S+ N + N+++L A + P Y Y Sbjct: 116 -GLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCYT 174 Query: 161 HLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG--LLPVFSKP-TGEFGELTVADA 217 +K + K ++ R + +S+ T M L LQ+ ++PV + GE D Sbjct: 175 --MKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQQRNPPVIPVLQEIYKGEKKPEIFVDG 232 Query: 218 EMLL---QEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHR 274 + Q +LP + + E +G+ ++ L RF Y ++DF +S+ Sbjct: 233 WNIYFFDQIDELPTYWSECGKNTESVGQ-LWLGLLRF--YTEEFDFKEHVISI------- 282 Query: 275 TVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDEN-DFSASMQNETTQRPSNSPYVV 333 R LL + K+ K+I ED P D N + A + + T +++ Sbjct: 283 --------RRKSLLTTFKKQWTSKYIV--IED-PFDLNHNLGAGLSRKMTN------FIM 325 Query: 334 EDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE 369 + F+N GRRV V+ +++ E D + Sbjct: 326 KAFIN----GRRVFGIPVKGFPKDYPSKMEYFFDPD 357 >5A2X-A nrPDB Length = 555 Score = 264 bits (675), Expect = 4e-71, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 21/241 (8%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAM--- 103 + V+ FGS V+ F D D+ L + + M++ + +M R E A Sbjct: 206 STVKPFGSSVNTFGKLGCDVDMFLDFHDIQKHATKMKKGPFEMEYQMKRLPSERLATQKI 265 Query: 104 -------------GMEDVRYI-RARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIR 149 G V+ I AR P+V+F+ TG CD+S+ N + S++L Sbjct: 266 LSIIGDCLDNFGPGYSSVQKILNARCPLVKFSHQPTGFQCDLSVSNSIAIRCSELLYIYG 325 Query: 150 QVFPDFYGAYIHLVKAWGKAREVIAPERSTF-NSFTVTTMALMVLQELGLLPVFSKPTGE 208 + P A + ++ W + + T+ +F++T M + LQ+ P + Sbjct: 326 CLDPRVR-ALVFSLRCWARVHGLTNSVPGTWITNFSLTMMIMFFLQKRS--PPIIPTLDQ 382 Query: 209 FGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLI 268 EL + ++ + + D K E + L F +Y+ +DF +++L Sbjct: 383 LKELADEKDKHVIGGYDCSFVSDLSKIKPTKNTETLDELLCDFFQYFGNFDFRKNSLNLR 442 Query: 269 H 269 Sbjct: 443 K 443 >3NYB-A nrPDB Length = 323 Score = 142 bits (358), Expect = 2e-34, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 18/174 (10%) Query: 47 AHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNN--KRMTRFGKEASAMG 104 A + +FGS+ + P SD D +T L G E +NN + K+ A Sbjct: 60 ADLHVFGSYSTDLYLPGSDIDCVVTSE-----LGGKE---SRNNLYSLASHLKKKNLATE 111 Query: 105 MEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGA--YIHL 162 +E V +AR+P+++F + +GIH VS G+E +K+ IR+ D G + + Sbjct: 112 VEVVA--KARVPIIKFVEPHSGIHIAVSFERTNGIEAAKL---IREWLDDTPGLRELVLI 166 Query: 163 VKAWGKAREVIAPERSTFNSFTVTTMALMVLQ-ELGLLPVFSKPTGEFGELTVA 215 VK + AR + F++ + L ++ P G L + Sbjct: 167 VKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIE 220 >5WU3-A nrPDB Length = 573 Score = 116 bits (291), Expect = 1e-26, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 110/356 (30%), Gaps = 46/356 (12%) Query: 49 VELFGSHVSGFCTPHSDADISLTYRNF------------SPWLQGMERVDEQNNKRMTRF 96 V FGS ++ F D D+ L + SP L+ E D + Sbjct: 61 VHPFGSSINSFDVHGCDLDLFLDLGDLEEPQPVPKLPPASPLLEDREEGDLGKASELAET 120 Query: 97 GKEASAMG------------------MEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGG 138 KE A G AR PVV+F +G+H DVS+ N Sbjct: 121 PKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFAHRPSGLHGDVSLSNRLA 180 Query: 139 VENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 198 + NS+ L ++ ++ ++AW + R + +++ +T + + LQ Sbjct: 181 LHNSRFLSLASELDGRVR-PLVYTLRAWAQGRGLSGSGP-LLSNYALTLLVIYFLQTRD- 237 Query: 199 LPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKY 258 P + + ++ + + D+ + E + L +F + + Sbjct: 238 -PPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSAVSSW 296 Query: 259 DFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDEN-DFSAS 317 D +SL + G L + P D + + +A+ Sbjct: 297 DLRGSLLSLREGQALPVAG-----------GLPSNLWEGLRLGPLNLQDPFDLSHNVAAN 345 Query: 318 MQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELK 373 + + R N ++ + RR R + + + + Sbjct: 346 VTSRVAGRLQNCCRAAANYARSLQYQRRSSRGRDWGLLPLLQPSSPSSLLSATPIP 401 >5WU6-A nrPDB Length = 485 Score = 116 bits (291), Expect = 1e-26, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 34/250 (13%) Query: 49 VELFGSHVSGFCTPHSDADISLTYRNF------------SPWLQGMERVDEQNNKRMTRF 96 V FGS ++ F D D+ L + SP L+ E D + Sbjct: 148 VHPFGSSINSFDVHGCDLDLFLDLGDLEEPQPVPKLPPASPLLEDREEGDLGKASELAET 207 Query: 97 GKEASAMG------------------MEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGG 138 KE A G AR PVV+F +G+H DVS+ N Sbjct: 208 PKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFAHRPSGLHGDVSLSNRLA 267 Query: 139 VENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 198 + NS+ L ++ ++ ++AW + R + +++ +T + + LQ Sbjct: 268 LHNSRFLSLASELDGRVR-PLVYTLRAWAQGRGLSGSGP-LLSNYALTLLVIYFLQTRD- 324 Query: 199 LPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKY 258 P + + ++ + + D+ + E + L +F + + Sbjct: 325 -PPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSAVSSW 383 Query: 259 DFSAGTVSLI 268 D +SL Sbjct: 384 DLRGSLLSLR 393 >2NOM-A nrPDB Length = 353 Score = 71.8 bits (174), Expect = 6e-13, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 99/314 (31%), Gaps = 32/314 (10%) Query: 10 RGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVS-GFCTPHSDADI 68 R ++ ++ + H+ + + VLD + FGS V G SD D Sbjct: 30 RSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDF 89 Query: 69 SL----TYRNFSPWLQGMERVDEQNNKRMTRFGK----EASAMGMEDVRYIRARIPVVQF 120 + + + + + + + + +E+VR R + V+ Sbjct: 90 VVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVK- 148 Query: 121 TDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERST- 179 G + D++ GV NS +L A + P +K W K + A Sbjct: 149 --GGGAVDFDITAYRRNGVRNSALLRAYFEQNPPCRW-LSMSIKRWSKQTGLNASVIGGS 205 Query: 180 FNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEK 239 S+ M + L + L T + + + L+E Sbjct: 206 ITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEE-------------PAD 252 Query: 240 LGEAVFFCLQRFAEYY-AKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEK 298 G + + F ++ ++D +SL P T E + E R+ EK Sbjct: 253 EGLELGTQVLDFLHFFLHEFDSDKQVISLNRP-GITTKEELDWTKSAE---DFARMNGEK 308 Query: 299 HIAEHKEDGPLDEN 312 + + P + N Sbjct: 309 VHYQWCIEDPYELN 322 >2B4V-A nrPDB Length = 468 Score = 59.8 bits (143), Expect = 2e-09, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 55/156 (35%), Gaps = 16/156 (10%) Query: 118 VQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPER 177 V+F + D+S GV+NS ++ P VKAWGKA V A Sbjct: 236 VRFVPEMFMYRWDISFVGY-GVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSG 294 Query: 178 STFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDD 237 + S+ VT M + L ++ D L LP D D Sbjct: 295 AMLTSYAVTVMFIYYLL-------------VTRQVLWVDPWSLPHPAHLPRYPDFSPLYD 341 Query: 238 EKLGEAVFFCLQRFAEYYA-KYDFSAGTVSLIHPRR 272 E + L F +YA +D+ VSL RR Sbjct: 342 CDPTE-LGRLLHGFFIFYAHHFDYEREVVSLNRNRR 376 >4LT6-A nrPDB Length = 514 Score = 42.1 bits (97), Expect = 5e-04, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 33 QKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDAD-ISLTYRNFSPWLQGMERVDEQNNK 91 + + L ++A + FGS+ G T +D D + + R+ E+++ Sbjct: 86 ESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHV-----------ERSDF 134 Query: 92 RMTRFGKEASAMGMEDVRYIR-ARIPVVQFTDGVTGIHCDVSIG---------------- 134 + F K G+ ++R + A +PV++F GI D+ Sbjct: 135 FQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFD--GIEIDLVFARLAIQTISDNLDLRDD 192 Query: 135 ---NIGGVENSKILCAIRQVFP--------DFYGAYIHLVKAWGKAREVIAPERSTFNSF 183 + + L R + + + VK W K R + + Sbjct: 193 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 252 Query: 184 TVTTMA 189 + + Sbjct: 253 SWAMLV 258 >1Q78-A nrPDB Length = 514 Score = 36.3 bits (82), Expect = 0.021, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 52/221 (23%) Query: 48 HVELFGSHVSGFCTPHSDAD-ISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGME 106 + FGS+ G T +D D + + R+ +++ + + K ++ Sbjct: 96 KIFTFGSYRLGVHTKGADIDALCVAPRHVD-----------RSDFFTSFYDKLKLQEEVK 144 Query: 107 DVRYI-RARIPVVQFTDGVTGIHCDVSIGN-------------------IGGVENSKILC 146 D+R + A +PV++ GI D+ + + L Sbjct: 145 DLRAVEEAFVPVIKLCFD--GIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLN 202 Query: 147 AIRQVFP--------DFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 198 R D + + +K W K + + + + Q Sbjct: 203 GCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQ--LY 260 Query: 199 LPVFSKPTGEFGELTVAD-----AEMLLQEFKLP---PIYD 231 + L + +L Q + P++D Sbjct: 261 PNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWD 301 >2O1P-A nrPDB Length = 546 Score = 31.3 bits (69), Expect = 0.79, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 21/217 (9%) Query: 33 QKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADIS------LTYRNFSPWLQGMERVD 86 +K+ + GM + +GS+ G P SD D +T +F + R Sbjct: 68 KKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRER 127 Query: 87 EQNNKRM---------TRFGKEASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIG 137 ++ ++ + ++ + R + ++P+ + ++ ++ Sbjct: 128 KELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLR-NLDEKDLR 186 Query: 138 GVENSKILCAIRQVFPD--FYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQE 195 + +++ I ++ P + + +K W + R V A + + Q Sbjct: 187 ALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ- 245 Query: 196 LGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDS 232 L P + Q L PI D Sbjct: 246 --LYPNACSAVILNRFFIILSEWNWPQPVILKPIEDG 280 >5G4A-B nrPDB Length = 270 Score = 29.0 bits (63), Expect = 3.6, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%) Query: 49 VELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAM 103 + L+GS V+G P+SD D+ +T L +R ASA Sbjct: 31 IHLYGSAVAGGLKPNSDIDLLVT---ICQPLTEAQRATLMQELLALSSPPGASAE 82 >3IJ3-A nrPDB Length = 482 Score = 28.3 bits (61), Expect = 5.8, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 302 EHKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYV--NCGRRVQASRVRHIQQEFN 359 +++ P F + + Y++ D +N + G A V+H+ +EF Sbjct: 142 AYRKRSPYLAKLFLPQAHRKRVTDWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFE 201 Query: 360 RLREMLIDKESELKFDEVF---RESDTVP 385 +++ K+ E +F ++ R P Sbjct: 202 AKVKIIESKDLETEFPAIYAVGRAGSRPP 230 >4TWE-A nrPDB Length = 743 Score = 28.3 bits (61), Expect = 6.6, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 122 DGVTGIHCDVSIGNIGGVENSK-ILCAIR-QVFPDFYGAYIHLVKAWGKAREVIAPERST 179 D +VS+ N + NS +L IR V PD Y Y + +W + P T Sbjct: 329 DFPADSQVNVSVYNRLELRNSSNVLGIIRGAVEPDRYVLYGNHRDSW--VHGAVDPSSGT 386 >2O5R-A nrPDB Length = 481 Score = 27.9 bits (60), Expect = 7.6, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 351 VRHIQQEFNRLRE-MLIDKESELKFDEVFRESDTVPRFQGFEGVGTR 396 V +E +RE +L + ++ E+F + DT R + +E G R Sbjct: 117 VYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLR 163 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.120 0.295 Lambda K H 0.267 0.0368 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,050,768 Number of Sequences: 36641 Number of extensions: 474387 Number of successful extensions: 1317 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1271 Number of HSP's gapped (non-prelim): 30 length of query: 406 length of database: 10,336,785 effective HSP length: 99 effective length of query: 307 effective length of database: 6,709,326 effective search space: 2059763082 effective search space used: 2059763082 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.9 bits)