BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= B2RYG6 (271 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4DDG-A nrPDB 506 e-144 3VON-A nrPDB 471 e-133 4DHZ-A nrPDB 253 6e-68 4FJV-A nrPDB 226 6e-60 4DHI-B nrPDB 164 5e-41 6D9J-s nrPDB 30 1.6 3ZXV-A nrPDB 29 1.8 1M5X-A nrPDB 28 3.0 3FD2-A nrPDB 28 3.1 5FV0-A nrPDB 28 3.5 4BDV-A nrPDB 28 4.4 1OFC-X nrPDB 28 4.7 5AJ0-AK nrPDB 28 4.9 4OEN-A nrPDB 27 6.6 6ELZ-w nrPDB 27 6.8 4EYH-B nrPDB 27 8.5 >4DDG-A nrPDB Length = 399 Score = 506 bits (1302), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/247 (99%), Positives = 246/247 (99%) Query: 25 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRK 84 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRK Sbjct: 153 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRK 212 Query: 85 TRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD 144 TRPDGN FYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD Sbjct: 213 TRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD 272 Query: 145 LIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFC 204 LIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFC Sbjct: 273 LIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFC 332 Query: 205 QQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPG 264 QQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPH+FPEGSEPKVYLLYRPG Sbjct: 333 QQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG 392 Query: 265 HYDILYK 271 HYDILYK Sbjct: 393 HYDILYK 399 >3VON-A nrPDB Length = 228 Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust. Identities = 226/227 (99%), Positives = 227/227 (100%) Query: 45 NPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEAL 104 NPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEAL Sbjct: 2 NPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEAL 61 Query: 105 LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFND 164 LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFND Sbjct: 62 LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFND 121 Query: 165 QSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALA 224 QSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALA Sbjct: 122 QSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALA 181 Query: 225 QALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK 271 QALSVSIQVEYMDRGEGGTTNPH+FPEGSEPKVYLLYRPGHYDILYK Sbjct: 182 QALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 228 >4DHZ-A nrPDB Length = 288 Score = 253 bits (646), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 128/277 (46%), Positives = 179/277 (64%), Gaps = 6/277 (2%) Query: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLV+ S+L E Sbjct: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVATLAPFSILCAE 60 Query: 61 Y-AEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSA 119 Y E + K +L + Y IR R DGNCFYRA +E +L D L++F A S Sbjct: 61 YDNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSR 120 Query: 120 KSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLAS-FNDQSTSDYLVVYLRLL 178 LV GF ++T DF + F++ +E++ + + + ND +++Y++++ RL+ Sbjct: 121 DWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLI 180 Query: 179 TSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDR 238 TS +L++ S+ + FI+ G TV ++C+QE+EPM K++DH+ I +L +A +++EYMDR Sbjct: 181 TSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDR 240 Query: 239 GEGGTTNPHV-FPEGSE---PKVYLLYRPGHYDILYK 271 H P + P++ LLYRPGHYD++YK Sbjct: 241 TAAPNGGWHYDIPSDDQQIAPEITLLYRPGHYDVIYK 277 >4FJV-A nrPDB Length = 237 Score = 226 bits (577), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 108/224 (48%), Positives = 158/224 (70%), Gaps = 2/224 (0%) Query: 47 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 106 L+SE+ ++ + +++ E+ IY++KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL Sbjct: 11 LISEKCDILSILRDHPEN-RIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 69 Query: 107 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 166 S+E+ +FK ++ DL++ GF E +F N F ++E VEK SV+ LL FNDQS Sbjct: 70 KSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 129 Query: 167 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 226 SD++V +LRLLTS +++ + FF HFI+ +K+FC EVEPM E DHI I AL+QA Sbjct: 130 ASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQA 189 Query: 227 LSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILY 270 LS+++QVEY+D + N HVFPE + P VYLLY+ HY+ILY Sbjct: 190 LSIALQVEYVDEMDTA-LNHHVFPEAATPSVYLLYKTSHYNILY 232 >4DHI-B nrPDB Length = 284 Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/276 (34%), Positives = 154/276 (55%), Gaps = 11/276 (3%) Query: 3 AEEPQQQKQEPLGSDSEGVNCLAYDEAIMA-QQDRIQQEIAVQNPLVSERLELSVLYKEY 61 A EPQ K + G +E V + DE ++ QQ + ++ PLV+ S+L EY Sbjct: 2 ANEPQ--KSDDNGQAAEAV--VTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEY 57 Query: 62 -AEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120 E + K +L + Y IR R DGNCFYRA +E +L D L++F A S Sbjct: 58 DNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRD 117 Query: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLAS-FNDQSTSDYLVVYLRLLT 179 LV GF ++T DF + F++ +E++ + + + ND +++Y++++ RL+T Sbjct: 118 WTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLIT 177 Query: 180 SGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG 239 S +L++ S+ + FI+ G TV ++C+QE+EPM K++DH+ I +L +A +++EYMDR Sbjct: 178 SAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRT 237 Query: 240 EGGTTNPHV-FPEGSE---PKVYLLYRPGHYDILYK 271 H P + P++ LLYRPGHYD++YK Sbjct: 238 AAPNGGWHYDIPSDDQQIAPEITLLYRPGHYDVIYK 273 >6D9J-s nrPDB Length = 303 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 21/50 (42%) Query: 186 ESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEY 235 E F+EG R V C Q P H I + L++S++ EY Sbjct: 208 EDTLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEY 257 >3ZXV-A nrPDB Length = 486 Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLEL 54 + P+ ++ E DS G LA+ +MA D I+ +I Q P+ + EL Sbjct: 363 ITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYEL 416 >1M5X-A nrPDB Length = 170 Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 22/52 (42%) Query: 68 YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSA 119 Y Q I D K +RK R DG Y G +HL +L D R K A Sbjct: 57 YLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQA 108 >3FD2-A nrPDB Length = 373 Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 22/52 (42%) Query: 68 YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSA 119 Y Q I D K +RK R DG Y G +HL +L D R K A Sbjct: 57 YLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQA 108 Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 22/52 (42%) Query: 68 YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSA 119 Y Q I D K +RK R DG Y G +HL +L D R K A Sbjct: 260 YLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQA 311 >5FV0-A nrPDB Length = 517 Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 63 EDDNIYQQKIKDLHKKYSYIR---KTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSA 119 E D+I Q +I ++ K+YS++ + N F + F +AL + K++++ V+ Sbjct: 423 ETDSIMQGRIANMMKQYSHLGFHVFVAGNANEFVKGF-----DALTAELKQIRQAILVTK 477 Query: 120 KSKEDLVSQGFT 131 KS++ L + FT Sbjct: 478 KSEQSLFALPFT 489 >4BDV-A nrPDB Length = 760 Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 14 LGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERL--ELSVLYKEYAEDD-NIYQQ 70 +G + V +AY + ++ IQ E + PL+ + L +++K A NIY Sbjct: 419 IGRKYKKVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPH 478 Query: 71 KIKDLHKKYS 80 I D+ YS Sbjct: 479 GITDVRPLYS 488 >1OFC-X nrPDB Length = 304 Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust. Identities = 11/18 (61%), Positives = 15/18 (83%) Query: 122 KEDLVSQGFTEFTIEDFH 139 KE+L+SQGFT +T DF+ Sbjct: 102 KENLLSQGFTAWTKRDFN 119 >5AJ0-AK nrPDB Length = 317 Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 21/50 (42%) Query: 186 ESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEY 235 E F+EG R V C Q P H I + L++S++ +Y Sbjct: 208 EETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDY 257 >4OEN-A nrPDB Length = 223 Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 19/37 (51%) Query: 76 HKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQ 112 KY Y KT DG+ Y + ++A++DD L+ Sbjct: 128 QSKYGYKIKTFADGSSMYDSLNTGAIDAVMDDEPVLK 164 >6ELZ-w nrPDB Length = 841 Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 116 AVSAKSKEDLVSQGFTEFTIEDFHN 140 A+ K+K DLV +GF +T D N Sbjct: 670 ALGQKNKHDLVDEGFNRYTFRDTEN 694 >4EYH-B nrPDB Length = 420 Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 18/100 (18%) Query: 102 EALLDDSKELQRFKAVSAKSKEDLVSQGFTEFT--IE--DFHNTFMDLIEQVEK--QTSV 155 + +L + ++L R++ +S K V++ EF+ +E F F+DL E VEK Q Sbjct: 90 QLVLVNGEDLTRYREMSYK-----VTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQ 144 Query: 156 ADLLAS-------FNDQSTSDYLVVYLRLLTSGYLQRESK 188 +D L++ +N+QS + V+++RLL + E + Sbjct: 145 SDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMR 184 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4DHZ-A nrPDB 422 e-118 4DDG-A nrPDB 413 e-116 4DHI-B nrPDB 373 e-104 3VON-A nrPDB 369 e-102 4FJV-A nrPDB 315 2e-86 Sequences not found previously or not previously below threshold: 6D6Q-K nrPDB 36 0.019 5FV0-A nrPDB 31 0.57 3FD2-A nrPDB 31 0.65 1M5X-A nrPDB 31 0.73 3TZE-A nrPDB 30 0.80 5IOB-A nrPDB 30 1.3 1LAR-A nrPDB 29 1.7 1OFC-X nrPDB 29 2.1 4OEN-A nrPDB 29 2.4 3DHA-A nrPDB 29 2.5 5HPT-C nrPDB 28 3.1 3UX9-A nrPDB 28 3.2 3Q9T-A nrPDB 28 3.6 4KSK-A nrPDB 28 4.9 5YGK-A nrPDB 27 9.4 CONVERGED! >4DHZ-A nrPDB Length = 288 Score = 422 bits (1084), Expect = e-118, Method: Composition-based stats. Identities = 128/277 (46%), Positives = 179/277 (64%), Gaps = 6/277 (2%) Query: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLV+ S+L E Sbjct: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVATLAPFSILCAE 60 Query: 61 Y-AEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSA 119 Y E + K +L + Y IR R DGNCFYRA +E +L D L++F A S Sbjct: 61 YDNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSR 120 Query: 120 KSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLAS-FNDQSTSDYLVVYLRLL 178 LV GF ++T DF + F++ +E++ + + + ND +++Y++++ RL+ Sbjct: 121 DWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLI 180 Query: 179 TSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDR 238 TS +L++ S+ + FI+ G TV ++C+QE+EPM K++DH+ I +L +A +++EYMDR Sbjct: 181 TSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDR 240 Query: 239 GEGGTTNPHV-FPEGSE---PKVYLLYRPGHYDILYK 271 H P + P++ LLYRPGHYD++YK Sbjct: 241 TAAPNGGWHYDIPSDDQQIAPEITLLYRPGHYDVIYK 277 >4DDG-A nrPDB Length = 399 Score = 413 bits (1062), Expect = e-116, Method: Composition-based stats. Identities = 245/247 (99%), Positives = 246/247 (99%) Query: 25 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRK 84 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRK Sbjct: 153 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRK 212 Query: 85 TRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD 144 TRPDGN FYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD Sbjct: 213 TRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD 272 Query: 145 LIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFC 204 LIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFC Sbjct: 273 LIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFC 332 Query: 205 QQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPG 264 QQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPH+FPEGSEPKVYLLYRPG Sbjct: 333 QQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG 392 Query: 265 HYDILYK 271 HYDILYK Sbjct: 393 HYDILYK 399 >4DHI-B nrPDB Length = 284 Score = 373 bits (958), Expect = e-104, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 154/276 (55%), Gaps = 11/276 (3%) Query: 3 AEEPQQQKQEPLGSDSEGVNCLAYDEAIMA-QQDRIQQEIAVQNPLVSERLELSVLYKEY 61 A EPQ K + G +E V + DE ++ QQ + ++ PLV+ S+L EY Sbjct: 2 ANEPQ--KSDDNGQAAEAV--VTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEY 57 Query: 62 -AEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120 E + K +L + Y IR R DGNCFYRA +E +L D L++F A S Sbjct: 58 DNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRD 117 Query: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLAS-FNDQSTSDYLVVYLRLLT 179 LV GF ++T DF + F++ +E++ + + + ND +++Y++++ RL+T Sbjct: 118 WTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLIT 177 Query: 180 SGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG 239 S +L++ S+ + FI+ G TV ++C+QE+EPM K++DH+ I +L +A +++EYMDR Sbjct: 178 SAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRT 237 Query: 240 EGGTTNPHV-FPEGSE---PKVYLLYRPGHYDILYK 271 H P + P++ LLYRPGHYD++YK Sbjct: 238 AAPNGGWHYDIPSDDQQIAPEITLLYRPGHYDVIYK 273 >3VON-A nrPDB Length = 228 Score = 369 bits (946), Expect = e-102, Method: Composition-based stats. Identities = 226/228 (99%), Positives = 227/228 (99%) Query: 44 QNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEA 103 NPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEA Sbjct: 1 SNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEA 60 Query: 104 LLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFN 163 LLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFN Sbjct: 61 LLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFN 120 Query: 164 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 223 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL Sbjct: 121 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 180 Query: 224 AQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK 271 AQALSVSIQVEYMDRGEGGTTNPH+FPEGSEPKVYLLYRPGHYDILYK Sbjct: 181 AQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 228 >4FJV-A nrPDB Length = 237 Score = 315 bits (806), Expect = 2e-86, Method: Composition-based stats. Identities = 108/224 (48%), Positives = 158/224 (70%), Gaps = 2/224 (0%) Query: 47 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 106 L+SE+ ++ + +++ E+ IY++KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL Sbjct: 11 LISEKCDILSILRDHPEN-RIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 69 Query: 107 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 166 S+E+ +FK ++ DL++ GF E +F N F ++E VEK SV+ LL FNDQS Sbjct: 70 KSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 129 Query: 167 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 226 SD++V +LRLLTS +++ + FF HFI+ +K+FC EVEPM E DHI I AL+QA Sbjct: 130 ASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQA 189 Query: 227 LSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILY 270 LS+++QVEY+D + N HVFPE + P VYLLY+ HY+ILY Sbjct: 190 LSIALQVEYVDEMDTA-LNHHVFPEAATPSVYLLYKTSHYNILY 232 >6D6Q-K nrPDB Length = 960 Score = 35.8 bits (81), Expect = 0.019, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 70/172 (40%), Gaps = 19/172 (11%) Query: 3 AEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLV---------SERLE 53 A EPQ Q +P S + L D ++ Q + ++ A++N +V + Sbjct: 49 ALEPQPQ--DPASSVCPQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAP 106 Query: 54 LSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDG--NCFYRAFGFS------HLEALL 105 + ++ + + + H + +Y+ + + + + RA + HL+ + Sbjct: 107 VYKRIRDVTNNQEKHFYTFTNEHHRETYVEQEQGENANDRNNRAIRVAAKWYNEHLKKMS 166 Query: 106 DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVAD 157 D++ F ++KE + +G FT E++ + E +++ +++ Sbjct: 167 ADNQLQVIFITNDRRNKEKAIEEGIPAFTCEEYVKSLTANPELIDRLACLSE 218 >5FV0-A nrPDB Length = 517 Score = 30.8 bits (68), Expect = 0.57, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 15/126 (11%) Query: 28 EAIMAQQDRIQQEIAVQNPLVSERLE-----LSVLYKEYAEDDNIYQQKIKDLHKKYSYI 82 +A++ Q++R + +N + + L + E D+I Q +I ++ K+YS++ Sbjct: 383 DAVLQQREREYIQAVNENRATTLAWPPVVFVVDSLLRLQQETDSIMQGRIANMMKQYSHL 442 Query: 83 R---KTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFT--EFTIED 137 + N F + F +AL + K++++ V+ KS++ L + FT E IE Sbjct: 443 GFHVFVAGNANEFVKGF-----DALTAELKQIRQAILVTKKSEQSLFALPFTRNEQEIEP 497 Query: 138 FHNTFM 143 F+ Sbjct: 498 GFGYFV 503 >3FD2-A nrPDB Length = 373 Score = 30.8 bits (68), Expect = 0.65, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 22/53 (41%) Query: 68 YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120 Y Q I D K +RK R DG Y G +HL +L D R K A Sbjct: 57 YLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQAN 109 Score = 30.8 bits (68), Expect = 0.65, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 22/53 (41%) Query: 68 YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120 Y Q I D K +RK R DG Y G +HL +L D R K A Sbjct: 260 YLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQAN 312 >1M5X-A nrPDB Length = 170 Score = 30.8 bits (68), Expect = 0.73, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 22/53 (41%) Query: 68 YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120 Y Q I D K +RK R DG Y G +HL +L D R K A Sbjct: 57 YLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQAN 109 >3TZE-A nrPDB Length = 406 Score = 30.4 bits (67), Expect = 0.80, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 13/130 (10%) Query: 53 ELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYR--AFGFSHL------EAL 104 + ++L E A + Y + K +I T P C Y AF + E Sbjct: 88 DFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKF 147 Query: 105 LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT-----FMDLIEQVEKQTSVADLL 159 L S L+ A ++ +D+V+ GF F N F + I ++ K ++ + + Sbjct: 148 LWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASHHFEENILKISKTINLNEAI 207 Query: 160 ASFNDQSTSD 169 F +S+ Sbjct: 208 KVFGFDMSSN 217 >5IOB-A nrPDB Length = 348 Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 1/78 (1%) Query: 190 FEHFIEGGRTVKEFCQQEV-EPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHV 248 F+HF GR + Q+V P E +I QALS + + Sbjct: 188 FKHFPGHGRASGDSHTQDVVTPALDELKTYDLIPYGQALSETDGAVMVGHMIVPGLGTDG 247 Query: 249 FPEGSEPKVYLLYRPGHY 266 P +P Y L R G Y Sbjct: 248 VPSSIDPATYQLLRSGDY 265 >1LAR-A nrPDB Length = 575 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 41 IAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSH 100 IA Q PL + + E+ + K++++ ++ + + + + Y+ F Sbjct: 378 IATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCH-QYWPAERSARYQYFVVDP 436 Query: 101 LEALLDDSKELQRFKAVSAK--SKEDLVSQGFTEFTIEDFHNT---FMDLIEQVEK 151 + L+ FK A+ + FT++ + T F+D I QV K Sbjct: 437 MAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHK 492 >1OFC-X nrPDB Length = 304 Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 110 ELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQ 152 E + + KE+L+SQGFT +T DF N F+ E+ + Sbjct: 90 EAEPLTEEEIQEKENLLSQGFTAWTKRDF-NQFIKANEKYGRD 131 >4OEN-A nrPDB Length = 223 Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 63 EDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDD 107 ++ Q + + KY Y KT DG+ Y + ++A++DD Sbjct: 115 KNGTASQTFLTENQSKYGYKIKTFADGSSMYDSLNTGAIDAVMDD 159 >3DHA-A nrPDB Length = 254 Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%) Query: 232 QVEYMDRGEGGTTNPHVFPEGSE--PKVYLLYRPGH 265 + EYM N + E P V LLY PGH Sbjct: 138 REEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGH 173 >5HPT-C nrPDB Length = 161 Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 17 DSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLH 76 +E + ++ + + ++PL ++ E EY++D + + ++ Sbjct: 90 SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAE------EYSKDRKKFCKNAEEFT 143 Query: 77 KKYSYIRKTRP 87 KKY R Sbjct: 144 KKYGEKRPVDG 154 >3UX9-A nrPDB Length = 169 Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 21/45 (46%) Query: 88 DGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTE 132 DGN F +A S L L+ L K SA EDL+ + TE Sbjct: 47 DGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTE 91 >3Q9T-A nrPDB Length = 577 Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 14/32 (43%) Query: 240 EGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK 271 E G NP PE + P + R YD YK Sbjct: 37 EAGIGNPEDIPEITTPSSAMDLRNSKYDWAYK 68 >4KSK-A nrPDB Length = 300 Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Query: 25 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVL------YKEYAEDDNIYQQKIKDLHKK 78 A DE I +++ + E P +S E+ ++ ++ + + +++ +K Sbjct: 6 AADE-IEKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQK 64 Query: 79 YSYIRKTRPDGNCFYRAFGF 98 ++ IR+ R D RA F Sbjct: 65 FTSIRRVRGDNYSALRATLF 84 >5YGK-A nrPDB Length = 217 Score = 26.9 bits (58), Expect = 9.4, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 8/158 (5%) Query: 93 YRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQ 152 Y A G +E + +E + ++A S + G E + F F ++I + Q Sbjct: 26 YAAMGDKIIEFMGWAKEEGVKTLYITASSAAN---HGRPEAAVNTFMEAFTEVIRRCHSQ 82 Query: 153 TSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMC 212 D S D + DYL L ES F H+I G ++ + Sbjct: 83 FKF-DFSGSL-DLVSEDYLTELSALRDKS--DSESDFTLHYI-LGMSLSHEVVGIFNKLN 137 Query: 213 KESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFP 250 + + LA+ V QV+Y+ R G FP Sbjct: 138 GKIPEMTEEILAENAYVPTQVDYIIRTGGAIRMSSFFP 175 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.135 0.350 Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,077,758 Number of Sequences: 36641 Number of extensions: 365806 Number of successful extensions: 1077 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 1030 Number of HSP's gapped (non-prelim): 54 length of query: 271 length of database: 10,336,785 effective HSP length: 95 effective length of query: 176 effective length of database: 6,855,890 effective search space: 1206636640 effective search space used: 1206636640 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 58 (26.9 bits)