LJ3D is a computational method to reconstruct high-resolution 3D chromosome structures based on the zero-inflated single-cell Hi-C data.
The C++ source code and a user manual of LJ3D can be downloaded from here.
Zha,M.Wang,N.Zhang,C and Wang,Z. (2021) Inferring single-cell 3D chromosomal structures based on Lennard-Jones potential. International Journal of Molecular Sciences, under review.