3D-XCI is a lattice-based 3D modeling tool for generating accurate and stable high-resolution 3D chromosome structures based on population Hi-C data.
The C++ source code and a user manual of 3D-XCI can be downloaded from here. (a GitHub downloading site will be built after the paper is published)
Hao Zhu, Nan Wang, Jonathan Z. Sun, Ras B. Pandey, Zheng Wang. Mathematical Biosciences and Engineering, 2019, 16(6): 7384-7404.